Variant report

Variant	rs11097900
Chromosome Location	chr4:78625435-78625436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78616697..78619248-chr4:78625271..78628203,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10007837	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1010728	0.82[AMR][1000 genomes]
rs10222901	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1039403	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10856982	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11097965	0.84[AMR][1000 genomes]
rs1156059	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11731374	0.86[AMR][1000 genomes]
rs11737353	0.86[AMR][1000 genomes]
rs11939576	0.93[AMR][1000 genomes]
rs12108312	0.82[AMR][1000 genomes]
rs12510593	0.84[AMR][1000 genomes]
rs12643960	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13105201	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13118459	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13128914	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13137909	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13138341	0.81[ASN][1000 genomes]
rs13144226	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17002824	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17002828	0.88[AMR][1000 genomes]
rs2030463	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2102116	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2134048	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2173869	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2174078	0.82[AMR][1000 genomes]
rs2174080	0.82[AMR][1000 genomes]
rs2866688	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2866690	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3205281	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4304001	0.88[AMR][1000 genomes]
rs4388114	0.86[AMR][1000 genomes]
rs4410552	0.88[AMR][1000 genomes]
rs4472161	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4541532	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4607246	0.86[AMR][1000 genomes]
rs4859871	0.81[ASN][1000 genomes]
rs4859872	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55673370	0.86[AMR][1000 genomes]
rs57501818	0.86[AMR][1000 genomes]
rs57896992	0.82[AMR][1000 genomes]
rs58358199	0.86[AMR][1000 genomes]
rs60135456	0.86[AMR][1000 genomes]
rs6533217	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6533226	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6533269	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6533271	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6533274	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6817305	0.88[AMR][1000 genomes]
rs6817823	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6821826	0.82[AMR][1000 genomes]
rs6823465	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6827822	0.86[AMR][1000 genomes]
rs6828302	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6829203	0.84[EUR][1000 genomes]
rs6833179	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6836627	0.86[AMR][1000 genomes]
rs6838630	0.86[AMR][1000 genomes]
rs6839504	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6849922	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6850111	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72868269	0.88[AMR][1000 genomes]
rs73827437	0.88[AMR][1000 genomes]
rs73827451	0.86[AMR][1000 genomes]
rs7656319	0.82[AMR][1000 genomes]
rs7661064	0.86[AMR][1000 genomes]
rs7673642	0.82[AMR][1000 genomes]
rs7674744	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7675586	0.84[AMR][1000 genomes]
rs7687812	0.86[AMR][1000 genomes]
rs7689226	0.86[AMR][1000 genomes]
rs7692075	0.86[AMR][1000 genomes]
rs885376	0.82[ASN][1000 genomes]
rs9996218	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829976	chr4:78576657-78757798	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11097900	CNOT6L	cis	Artery Tibial	GTEx
rs11097900	CNOT6L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78617400-78634400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:78620600-78628000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:78621000-78626000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:78621000-78629000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:78621000-78631200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:78621200-78633200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:78621200-78635800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:78621400-78645800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:78621600-78643800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:78622000-78638800	Weak transcription	NHEK	skin
11	chr4:78622400-78630800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:78622800-78629800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:78623400-78633000	Weak transcription	HSMM	muscle
14	chr4:78623800-78633000	Weak transcription	HSMMtube	muscle
15	chr4:78625000-78628000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:78625000-78628000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:78625000-78628000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:78625000-78631200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:78625000-78638800	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:78625200-78627800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:78625200-78631400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:78625400-78626000	Enhancers	Fetal Lung	lung

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