Variant report

Variant	rs60135456
Chromosome Location	chr4:78783818-78783819
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:604)
CpG islands
(count:61)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:604 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIX5	chr4:78783649-78784046	GM12878	blood:	n/a	n/a
2	RELA	chr4:78783076-78784500	GM15510	blood:	n/a	n/a
3	CEBPB	chr4:78782990-78784560	GM12878	blood:	n/a	n/a
4	POLR2A	chr4:78783083-78784580	K562	blood:	n/a	n/a
5	IRF1	chr4:78783098-78784450	K562	blood:	n/a	chr4:78783886-78783900 chr4:78783275-78783287 chr4:78783884-78783898 chr4:78783871-78783885 chr4:78783700-78783714 chr4:78783890-78783900
6	TBP	chr4:78783067-78784708	K562	blood:	n/a	n/a
7	MYC	chr4:78783674-78784418	Hela-S3	cervix:	n/a	n/a
8	YY1	chr4:78783015-78784443	SK-N-SH_RA	brain:	n/a	chr4:78783329-78783339 chr4:78783992-78784012
9	USF1	chr4:78783621-78784126	SK-N-SH	brain:	n/a	n/a
10	CHD1	chr4:78782839-78784591	GM12878	blood:	n/a	n/a
11	MAX	chr4:78783485-78784395	SK-N-SH	brain:	n/a	n/a
12	POLR2A	chr4:78783639-78783902	H1-hESC	embryonic stem cell:	n/a	n/a
13	NFATC1	chr4:78782880-78784609	GM12878	blood:	n/a	chr4:78783570-78783584
14	BACH1	chr4:78783621-78784483	H1-hESC	embryonic stem cell:	n/a	n/a
15	GABPA	chr4:78783307-78784453	A549	lung:	n/a	n/a
16	RXRA	chr4:78783668-78784068	HepG2	liver:	n/a	n/a
17	SP1	chr4:78783545-78784164	GM12878	blood:	n/a	chr4:78783873-78783885 chr4:78783873-78783884 chr4:78783875-78783884 chr4:78783874-78783883 chr4:78783874-78783883 chr4:78783874-78783888
18	POLR2A	chr4:78783501-78784534	GM12891	blood:	n/a	n/a
19	MYC	chr4:78783749-78784094	Hela-S3	cervix:	n/a	n/a
20	FOS	chr4:78783672-78784114	MCF10A-Er-Src	breast:	n/a	n/a
21	CUX1	chr4:78782887-78784663	K562	blood:	n/a	n/a
22	TAF1	chr4:78783604-78784400	Hela-S3	cervix:	n/a	n/a
23	TAF1	chr4:78783389-78784397	SK-N-SH	brain:	n/a	n/a
24	ELF1	chr4:78783478-78784276	SK-N-SH	brain:	n/a	n/a
25	ATF2	chr4:78782632-78784606	GM12878	blood:	n/a	n/a
26	MAX	chr4:78783545-78784520	ECC-1	luminal epithelium:	n/a	n/a
27	CEBPD	chr4:78783525-78784562	K562	blood:	n/a	n/a
28	POLR2A	chr4:78783233-78784729	H1-hESC	embryonic stem cell:	n/a	n/a
29	ELF1	chr4:78783620-78784131	HepG2	liver:	n/a	n/a
30	TBP	chr4:78782809-78784472	GM12878	blood:	n/a	n/a
31	CTCF	chr4:78783810-78783826	ProgFib	skin:	n/a	n/a
32	POLR2A	chr4:78783638-78784360	HepG2	liver:	n/a	n/a
33	TRIM28	chr4:78783000-78784481	K562	blood:	n/a	n/a
34	SIN3AK20	chr4:78783622-78784427	SK-N-SH	brain:	n/a	n/a
35	GABPA	chr4:78783568-78784137	Hela-S3	cervix:	n/a	n/a
36	MXI1	chr4:78782885-78784566	GM12878	blood:	n/a	n/a
37	SIX5	chr4:78783462-78784395	A549	lung:	n/a	n/a
38	POLR2A	chr4:78783616-78784434	GM10847	blood:	n/a	n/a
39	POLR2A	chr4:78783693-78784150	A549	lung:	n/a	n/a
40	ATF3	chr4:78783671-78784134	K562	blood:	n/a	chr4:78783875-78783884
41	TCF12	chr4:78783486-78784347	ECC-1	luminal epithelium:	n/a	n/a
42	GABPA	chr4:78783557-78784117	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr4:78783005-78784854	GM12892	blood:	n/a	n/a
44	YY1	chr4:78783611-78784357	HepG2	liver:	n/a	chr4:78783992-78784012
45	POU2F2	chr4:78783641-78784161	GM12878	blood:	n/a	n/a
46	KAP1	chr4:78783512-78784620	HEK293	kidney:	n/a	n/a
47	NFIC	chr4:78783602-78784471	HepG2	liver:	n/a	n/a
48	POLR2A	chr4:78783477-78784575	GM12892	blood:	n/a	n/a
49	CTCF	chr4:78783776-78783872	GM12878	blood:	n/a	n/a
50	POLR2A	chr4:78783542-78784306	PANC-1	pancreas:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:78783799-78783849	SAEC	small airway:	n/a
2	chr4:78783799-78783849	HCF	heart:	n/a
3	chr4:78783799-78783849	SK-N-MC	brain:	n/a
4	chr4:78783799-78783849	HUVEC	blood vessel:	n/a
5	chr4:78783799-78783849	HCT-116	colon:	n/a
6	chr4:78783799-78783849	GM12891	blood:	n/a
7	chr4:78783799-78783849	SK-N-SH	brain:	n/a
8	chr4:78783799-78783849	AoSMC	blood vessel:	n/a
9	chr4:78783799-78783849	BJ	skin:	n/a
10	chr4:78783799-78783849	GM06990	blood:	n/a
11	chr4:78783799-78783849	GM19239	blood:	n/a
12	chr4:78783799-78783849	CMK	blood:	n/a
13	chr4:78783799-78783849	MCF-7	breast:	n/a
14	chr4:78783799-78783849	HCPEpiC	choroid plexus:	n/a
15	chr4:78783799-78783849	PrEC	prostate:	n/a
16	chr4:78783799-78783849	HMEC	breast:	n/a
17	chr4:78783799-78783849	PFSK-1	brain:	n/a
18	chr4:78783799-78783849	NHDF-neo	bronchial:	n/a
19	chr4:78783799-78783849	HPAEpiC	pulmonary alveolar:	n/a
20	chr4:78783799-78783849	PANC-1	pancreas:	n/a
21	chr4:78783799-78783849	HepG2	liver:	n/a
22	chr4:78783799-78783849	AG09319	gingival:	n/a
23	chr4:78783799-78783849	NH-A	brain:	n/a
24	chr4:78783799-78783849	H1-hESC	embryonic stem cell:	embryo
25	chr4:78783799-78783849	HCM	heart:	n/a
26	chr4:78783799-78783849	NT2-D1	testis:	n/a
27	chr4:78783799-78783849	LNCaP	prostate:	n/a
28	chr4:78783799-78783849	NB4	blood:	n/a
29	chr4:78783799-78783849	HNPCEpiC	eye:	n/a
30	chr4:78783799-78783849	GM12878	blood:	n/a
31	chr4:78783799-78783849	HRE	kidney:	n/a
32	chr4:78783799-78783849	RPTEC	kidney:	n/a
33	chr4:78783799-78783849	Caco-2	colon:	n/a
34	chr4:78783799-78783849	Hela-S3	cervix:	n/a
35	chr4:78783799-78783849	AG04450	lung:	fetal
36	chr4:78783799-78783849	NHBE	bronchial:	n/a
37	chr4:78783799-78783849	HEK293	kidney:	embryo
38	chr4:78783799-78783849	HAEpiC	amniotic membrane:	n/a
39	chr4:78783799-78783849	Jurkat	blood:	n/a
40	chr4:78783799-78783849	ProgFib	skin:	n/a
41	chr4:78783799-78783849	ECC-1	luminal epithelium:	n/a
42	chr4:78783799-78783849	SKMC	muscle:	n/a
43	chr4:78783799-78783849	BE2_C	brain:	n/a
44	chr4:78783799-78783849	K562	blood:	n/a
45	chr4:78783799-78783849	Hepatocyte	liver:	n/a
46	chr4:78783799-78783849	T-47D	breast:	n/a
47	chr4:78783799-78783849	SK-N-SH_RA	brain:	n/a
48	chr4:78783799-78783849	HL-60	blood:	n/a
49	chr4:78783799-78783849	U87	brain:	n/a
50	chr4:78783799-78783849	HRPEpiC	eye:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:78738995..78744410-chr4:78782336..78785612,12	K562	blood:
2	chr4:78738764..78744926-chr4:78780904..78785516,9	MCF-7	breast:
3	chr4:78739289..78742998-chr4:78782109..78787360,12	MCF-7	breast:
4	chr4:78782853..78785738-chr4:78785814..78790538,6	MCF-7	breast:
5	chr4:78783315..78786116-chr4:78803157..78806156,2	MCF-7	breast:
6	chr4:78734703..78743448-chr4:78779372..78785561,20	K562	blood:

No data

Variant related genes	Relation type
MRPL1	TF binding region
MRPL1	CpG island
ENSG00000169288	Chromatin interaction
ENSG00000250214	Chromatin interaction
ENSG00000138767	Chromatin interaction

Extended variants
information (count: 139 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10007837	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1010728	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10222901	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1039403	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10428319	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10856982	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10856991	0.81[AMR][1000 genomes]
rs11097900	0.86[AMR][1000 genomes]
rs11097935	0.84[ASN][1000 genomes]
rs11097965	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1156059	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11721383	0.86[ASN][1000 genomes]
rs11723221	0.92[ASN][1000 genomes]
rs11727993	0.84[ASN][1000 genomes]
rs11729703	0.82[ASN][1000 genomes]
rs11730329	0.98[ASN][1000 genomes]
rs11730403	0.98[ASN][1000 genomes]
rs11731374	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11733759	0.97[ASN][1000 genomes]
rs11737353	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11737861	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11939576	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12108312	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12510593	0.84[AMR][1000 genomes]
rs12643960	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13105201	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13118459	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13128914	0.88[AMR][1000 genomes]
rs13131896	0.98[ASN][1000 genomes]
rs13137909	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13144225	0.84[ASN][1000 genomes]
rs13144226	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1402626	0.98[ASN][1000 genomes]
rs1501373	0.81[ASN][1000 genomes]
rs1521419	0.98[ASN][1000 genomes]
rs1554457	0.98[ASN][1000 genomes]
rs17002823	0.98[ASN][1000 genomes]
rs17002824	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17002825	0.98[ASN][1000 genomes]
rs17002828	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17002829	0.98[ASN][1000 genomes]
rs17002831	0.98[ASN][1000 genomes]
rs1813725	0.86[ASN][1000 genomes]
rs1980266	0.98[ASN][1000 genomes]
rs2030463	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2102116	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2134048	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2173869	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2174078	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2174080	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2866688	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2866690	0.88[AMR][1000 genomes]
rs28796999	0.90[ASN][1000 genomes]
rs28891692	0.90[ASN][1000 genomes]
rs2903291	0.84[ASN][1000 genomes]
rs3205281	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3849580	0.84[ASN][1000 genomes]
rs4078523	0.96[ASN][1000 genomes]
rs4304001	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4365752	0.98[ASN][1000 genomes]
rs4388114	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4410552	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4417999	0.82[ASN][1000 genomes]
rs4472161	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4541532	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4546268	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4561950	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4607246	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859872	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4859878	0.84[ASN][1000 genomes]
rs55673370	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55694923	0.98[ASN][1000 genomes]
rs55886549	0.98[ASN][1000 genomes]
rs56138517	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57246363	0.98[ASN][1000 genomes]
rs57501818	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57868780	0.92[ASN][1000 genomes]
rs57896992	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58218398	0.98[ASN][1000 genomes]
rs58358199	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533217	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6533226	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6533269	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6533270	0.84[ASN][1000 genomes]
rs6533271	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6533272	0.84[ASN][1000 genomes]
rs6533274	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6533290	0.98[ASN][1000 genomes]
rs6817305	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6817823	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6821826	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6822317	0.98[ASN][1000 genomes]
rs6823465	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6827822	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828302	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6829203	0.84[EUR][1000 genomes]
rs6830993	0.81[ASN][1000 genomes]
rs6832015	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6833179	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6836627	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6838630	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6839504	0.93[AMR][1000 genomes]
rs6849922	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6850049	0.84[ASN][1000 genomes]
rs6850111	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6854989	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6857067	0.84[ASN][1000 genomes]
rs72868269	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72869573	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73827437	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73827443	0.98[ASN][1000 genomes]
rs73827451	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7439347	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7656319	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7657658	0.98[ASN][1000 genomes]
rs7659122	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7661064	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7663359	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7671941	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7673642	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7674744	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7675586	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7687170	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7687812	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7689226	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7692075	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9996218	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879501	chr4:78647634-78866007	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1818157	chr4:78678104-78849088	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2752050	chr4:78693311-78975321	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1010714	chr4:78742505-78991030	Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv1824966	chr4:78747771-78823070	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv516836	chr4:78748977-78981919	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv594704	chr4:78748977-78981919	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv461562	chr4:78757015-78981919	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv461563	chr4:78757015-78981919	Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv594705	chr4:78757015-78981919	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1008217	chr4:78777531-78957311	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv537145	chr4:78777531-78957311	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs60135456	CNOT6L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78782600-78784800	Active TSS	Right Atrium	heart
2	chr4:78782600-78785200	Active TSS	Stomach Smooth Muscle	stomach
3	chr4:78782600-78785400	Active TSS	Thymus	Thymus
4	chr4:78782800-78784600	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr4:78782800-78784800	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr4:78782800-78784800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:78782800-78784800	Active TSS	Colonic Mucosa	Colon
8	chr4:78782800-78785000	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr4:78782800-78785000	Active TSS	Brain Angular Gyrus	brain
10	chr4:78782800-78785000	Active TSS	Psoas Muscle	Psoas
11	chr4:78782800-78785000	Active TSS	Right Ventricle	heart
12	chr4:78782800-78785600	Active TSS	GM12878-XiMat	blood
13	chr4:78783000-78784000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr4:78783000-78784200	Active TSS	Primary T cells fromperipheralblood	blood
15	chr4:78783000-78784200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:78783000-78784200	Active TSS	Fetal Muscle Trunk	muscle
17	chr4:78783000-78784400	Active TSS	Liver	Liver
18	chr4:78783000-78784600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:78783000-78784600	Active TSS	Aorta	Aorta
20	chr4:78783000-78784600	Active TSS	Left Ventricle	heart
21	chr4:78783000-78784800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:78783000-78784800	Active TSS	Brain Substantia Nigra	brain
23	chr4:78783000-78784800	Active TSS	Colon Smooth Muscle	Colon
24	chr4:78783000-78784800	Active TSS	Placenta	Placenta
25	chr4:78783000-78784800	Active TSS	Placenta Amnion	Placenta Amnion
26	chr4:78783000-78785000	Active TSS	H9 Cell Line	embryonic stem cell
27	chr4:78783000-78785000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:78783000-78785000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr4:78783000-78785000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:78783000-78785000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:78783000-78785000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:78783000-78785000	Active TSS	Brain Anterior Caudate	brain
33	chr4:78783000-78785000	Active TSS	Fetal Intestine Small	intestine
34	chr4:78783000-78785000	Active TSS	Pancreas	Pancrea
35	chr4:78783000-78785000	Active TSS	Rectal Smooth Muscle	rectum
36	chr4:78783000-78785000	Active TSS	Small Intestine	intestine
37	chr4:78783000-78785200	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr4:78783000-78785200	Active TSS	H1 Cell Line	embryonic stem cell
39	chr4:78783000-78785200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:78783000-78785200	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr4:78783000-78785400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:78783200-78784000	Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr4:78783200-78784200	Active TSS	Primary monocytes fromperipheralblood	blood
44	chr4:78783200-78784200	Active TSS	Primary B cells from cord blood	blood
45	chr4:78783200-78784200	Active TSS	Primary T cells from cord blood	blood
46	chr4:78783200-78784200	Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr4:78783200-78784200	Active TSS	Adipose Nuclei	Adipose
48	chr4:78783200-78784200	Active TSS	HepG2	liver
49	chr4:78783200-78784400	Active TSS	Primary B cells from peripheral blood	blood
50	chr4:78783200-78784400	Active TSS	Primary T helper naive cells from peripheral blood	blood

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