Variant report

Variant	rs11097965
Chromosome Location	chr4:78827035-78827036
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr4:78826954-78827493	K562	blood:	n/a	chr4:78826987-78826995
2	CEBPB	chr4:78826877-78827503	K562	blood:	n/a	n/a
3	TEAD4	chr4:78826878-78827547	K562	blood:	n/a	n/a
4	GATA1	chr4:78826625-78827731	K562	blood:	n/a	chr4:78826860-78826871
5	ARID3A	chr4:78826934-78827524	K562	blood:	n/a	n/a
6	TAL1	chr4:78826937-78827452	K562	blood:	n/a	n/a
7	MAX	chr4:78827003-78827427	K562	blood:	n/a	n/a
8	TEAD4	chr4:78826873-78827480	K562	blood:	n/a	n/a
9	RCOR1	chr4:78826960-78827600	K562	blood:	n/a	n/a
10	GATA1	chr4:78826690-78827676	PBDE	blood:	n/a	chr4:78826860-78826871
11	JUN	chr4:78826803-78827134	HepG2	liver:	n/a	chr4:78826986-78826999
12	STAT5A	chr4:78827025-78827363	K562	blood:	n/a	n/a
13	MAZ	chr4:78827035-78827460	K562	blood:	n/a	n/a
14	CEBPD	chr4:78826904-78827478	K562	blood:	n/a	n/a
15	STAT5A	chr4:78826945-78827451	K562	blood:	n/a	n/a
16	GATA2	chr4:78826915-78827477	K562	blood:	n/a	n/a
17	POLR2A	chr4:78827007-78827396	K562	blood:	n/a	n/a
18	POLR2A	chr4:78826941-78827403	K562	blood:	n/a	n/a
19	MYC	chr4:78827026-78827458	K562	blood:	n/a	n/a
20	CEBPD	chr4:78826917-78827564	K562	blood:	n/a	n/a
21	GATA2	chr4:78827031-78827319	SH-SY5Y	brain:	n/a	n/a
22	JUND	chr4:78826901-78827501	K562	blood:	n/a	n/a
23	PML	chr4:78826923-78827492	K562	blood:	n/a	n/a
24	JUND	chr4:78826900-78827078	HepG2	liver:	n/a	n/a
25	USF1	chr4:78827009-78827436	K562	blood:	n/a	n/a
26	NR2F2	chr4:78826989-78827525	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:78825966..78828608-chr4:78831298..78833408,2	K562	blood:
2	chr4:78819042..78822002-chr4:78825525..78828218,2	K562	blood:
3	chr4:78817939..78819468-chr4:78825974..78827657,2	MCF-7	breast:

No data

Variant related genes	Relation type
MRPL1	TF binding region

Extended variants
information (count: 165 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs10005741	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs10007837	0.90[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes]
rs1010728	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10222901	0.94[ASW][hapmap];0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes]
rs1039403	0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[AMR][1000 genomes]
rs1039467	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10428319	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10856982	0.91[AMR][1000 genomes]
rs10856991	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11097900	0.84[AMR][1000 genomes]
rs11097935	0.83[CHB][hapmap]
rs11097980	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1156059	0.91[AMR][1000 genomes]
rs11721383	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11723221	0.85[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs11729703	0.96[ASN][1000 genomes]
rs11730329	0.84[ASN][1000 genomes]
rs11730403	0.84[ASN][1000 genomes]
rs11731374	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11732039	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11733759	0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11734428	0.88[ASN][1000 genomes]
rs11737353	0.94[ASW][hapmap];0.91[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11737861	0.94[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11931686	0.82[YRI][hapmap]
rs11939576	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12108312	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12510593	0.90[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes]
rs12643960	0.88[AMR][1000 genomes]
rs13105201	0.88[AMR][1000 genomes]
rs13118459	0.83[ASW][hapmap];0.90[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes]
rs13128914	0.86[AMR][1000 genomes]
rs13131896	0.84[ASN][1000 genomes]
rs13137909	0.91[AMR][1000 genomes]
rs13144226	0.91[AMR][1000 genomes]
rs1402626	0.84[ASN][1000 genomes]
rs1501373	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs1502879	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1521419	0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1553386	0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1554457	0.85[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs17002823	0.84[ASN][1000 genomes]
rs17002824	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17002825	0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs17002828	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17002829	0.85[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs17002831	0.84[ASN][1000 genomes]
rs1847216	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1980266	0.84[ASN][1000 genomes]
rs2030463	0.91[AMR][1000 genomes]
rs2102116	0.94[ASW][hapmap];0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs2134048	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes]
rs2134459	0.83[ASN][1000 genomes]
rs2173869	0.90[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes]
rs2174078	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2174080	1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2866688	0.94[ASW][hapmap];0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.90[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2866689	0.85[CHB][hapmap]
rs2866690	0.94[ASW][hapmap];0.90[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes]
rs28796999	0.87[ASN][1000 genomes]
rs28891692	0.87[ASN][1000 genomes]
rs2903291	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs3205281	0.94[ASW][hapmap];0.81[CEU][hapmap];0.92[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes]
rs3860617	0.85[ASN][1000 genomes]
rs4078523	0.82[ASN][1000 genomes]
rs4304001	0.94[ASW][hapmap];0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4331798	0.90[ASN][1000 genomes]
rs4365752	0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs4388114	0.94[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4410552	0.94[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4417999	0.96[ASN][1000 genomes]
rs4472161	0.86[AMR][1000 genomes]
rs4473672	0.90[ASN][1000 genomes]
rs4541532	0.91[AMR][1000 genomes]
rs4546268	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4561950	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4607246	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4859871	0.85[CHB][hapmap];0.84[CHD][hapmap]
rs4859872	0.91[AMR][1000 genomes]
rs4859878	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs4859901	0.88[JPT][hapmap]
rs55673370	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55694923	0.84[ASN][1000 genomes]
rs55886549	0.84[ASN][1000 genomes]
rs56138517	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57221952	0.90[ASN][1000 genomes]
rs57246363	0.84[ASN][1000 genomes]
rs57501818	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57868780	0.85[ASN][1000 genomes]
rs57896992	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58054752	0.90[ASN][1000 genomes]
rs58218398	0.88[ASN][1000 genomes]
rs58358199	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60135456	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6533217	0.88[AMR][1000 genomes]
rs6533226	0.86[AMR][1000 genomes]
rs6533239	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs6533269	0.91[AMR][1000 genomes]
rs6533271	0.91[AMR][1000 genomes]
rs6533274	0.88[AMR][1000 genomes]
rs6533290	0.84[ASN][1000 genomes]
rs6533358	0.85[ASN][1000 genomes]
rs6533359	0.85[ASN][1000 genomes]
rs6533374	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6533376	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6533382	0.90[CEU][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.81[TSI][hapmap]
rs6817305	0.88[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6817823	0.91[AMR][1000 genomes]
rs6821826	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6822317	0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs6823465	0.88[AMR][1000 genomes]
rs6827822	0.83[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6828302	0.91[AMR][1000 genomes]
rs6830993	0.95[ASN][1000 genomes]
rs6832015	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6833179	0.88[AMR][1000 genomes]
rs6836627	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6838630	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6839504	0.90[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes]
rs6849922	0.91[AMR][1000 genomes]
rs6850111	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes]
rs6850590	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6851286	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6854989	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6857479	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs72868269	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72869573	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73827437	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73827443	0.84[ASN][1000 genomes]
rs73827451	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73827456	0.89[ASN][1000 genomes]
rs73827459	0.88[ASN][1000 genomes]
rs73827460	0.88[ASN][1000 genomes]
rs7439347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7655949	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs7656319	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7657658	0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7659122	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7661064	0.88[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7663359	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7671941	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7673642	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7674744	0.94[ASW][hapmap];0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes]
rs7675586	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7687170	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7687812	0.94[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7689226	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7692075	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7698246	0.90[CEU][hapmap];0.88[JPT][hapmap]
rs950264	0.90[CEU][hapmap]
rs9991424	0.83[ASN][1000 genomes]
rs9993942	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs9996218	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879501	chr4:78647634-78866007	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1818157	chr4:78678104-78849088	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2752050	chr4:78693311-78975321	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1010714	chr4:78742505-78991030	Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv516836	chr4:78748977-78981919	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv594704	chr4:78748977-78981919	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv461562	chr4:78757015-78981919	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv461563	chr4:78757015-78981919	Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv594705	chr4:78757015-78981919	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv1008217	chr4:78777531-78957311	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv537145	chr4:78777531-78957311	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11097965	CNOT6L	Cis_1M	lymphoblastoid	RTeQTL
rs11097965	CNOT6L	cis	Artery Tibial	GTEx
rs11097965	G3BP2	cis	parietal	SCAN
rs11097965	G3BP2	cis	cerebellum	SCAN

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78784800-78842200	Weak transcription	HSMMtube	muscle
2	chr4:78784800-78859800	Weak transcription	Esophagus	oesophagus
3	chr4:78785000-78831200	Weak transcription	Brain Angular Gyrus	brain
4	chr4:78785000-78831600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:78785000-78841800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:78785000-78874400	Weak transcription	Right Ventricle	heart
7	chr4:78785400-78829800	Weak transcription	Fetal Heart	heart
8	chr4:78790600-78843400	Weak transcription	Small Intestine	intestine
9	chr4:78794000-78851200	Weak transcription	Spleen	Spleen
10	chr4:78794200-78851800	Weak transcription	Lung	lung
11	chr4:78795600-78831800	Weak transcription	NHLF	lung
12	chr4:78795600-78833000	Weak transcription	Brain Germinal Matrix	brain
13	chr4:78799200-78832000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:78802400-78858400	Weak transcription	Aorta	Aorta
15	chr4:78806000-78841400	Weak transcription	A549	lung
16	chr4:78806000-78881000	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:78806600-78875600	Weak transcription	Colonic Mucosa	Colon
18	chr4:78808800-78852400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:78809200-78836800	Weak transcription	Fetal Brain Female	brain
20	chr4:78809200-78837400	Weak transcription	Fetal Brain Male	brain
21	chr4:78809200-78847000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:78809400-78829800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:78809400-78831000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:78809400-78831200	Weak transcription	Brain Substantia Nigra	brain
25	chr4:78809400-78831600	Weak transcription	Brain Anterior Caudate	brain
26	chr4:78809400-78834400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:78809400-78841000	Weak transcription	Hela-S3	cervix
28	chr4:78809600-78851200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr4:78809600-78851400	Weak transcription	Ovary	ovary
30	chr4:78809600-78865400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:78809600-78881200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr4:78810000-78829800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr4:78810000-78851800	Weak transcription	Thymus	Thymus
34	chr4:78810400-78843400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:78814000-78841600	Weak transcription	Osteobl	bone
36	chr4:78814400-78829600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:78814600-78828600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr4:78814600-78829000	Weak transcription	Fetal Intestine Large	intestine
39	chr4:78814600-78829800	Weak transcription	Fetal Stomach	stomach
40	chr4:78814600-78829800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:78814600-78843400	Weak transcription	Left Ventricle	heart
42	chr4:78814600-78874400	Weak transcription	Pancreas	Pancrea
43	chr4:78816400-78829800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr4:78816400-78833200	Weak transcription	HUVEC	blood vessel
45	chr4:78816400-78866400	Weak transcription	Fetal Thymus	thymus
46	chr4:78816400-78876000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr4:78816600-78829000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr4:78816600-78851400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr4:78816600-78875800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr4:78818600-78831600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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