Variant report

Variant	rs7671941
Chromosome Location	chr4:78834863-78834864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 168 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10005741	0.92[CHB][hapmap];0.88[CHD][hapmap]
rs10007837	0.90[CEU][hapmap];0.92[CHB][hapmap];0.84[AMR][1000 genomes]
rs1010728	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10222901	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs1039403	0.82[AMR][1000 genomes]
rs1039467	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10428319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10856982	0.84[AMR][1000 genomes]
rs10856991	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11097935	0.91[CHB][hapmap]
rs11097965	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.82[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097980	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1156059	0.84[AMR][1000 genomes]
rs11721383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11723221	0.92[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11729703	1.00[ASN][1000 genomes]
rs11730329	0.80[ASN][1000 genomes]
rs11730403	0.80[ASN][1000 genomes]
rs11731374	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11732039	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11733759	0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs11734428	0.93[ASN][1000 genomes]
rs11737353	0.94[ASW][hapmap];0.83[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11737861	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.87[TSI][hapmap];0.85[YRI][hapmap]
rs11931686	0.82[YRI][hapmap]
rs11939576	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12108312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12509847	0.82[YRI][hapmap]
rs12510593	0.90[CEU][hapmap];0.91[CHB][hapmap]
rs12643960	0.82[AMR][1000 genomes]
rs13105201	0.82[AMR][1000 genomes]
rs13118459	0.83[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs13131896	0.80[ASN][1000 genomes]
rs13137909	0.84[AMR][1000 genomes]
rs13144226	0.84[AMR][1000 genomes]
rs1402626	0.80[ASN][1000 genomes]
rs1501373	0.92[CHB][hapmap];0.88[CHD][hapmap]
rs1502879	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1521419	0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs1553386	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1554457	0.92[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs17002823	0.80[ASN][1000 genomes]
rs17002824	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17002825	0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs17002828	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17002829	0.92[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs17002831	0.80[ASN][1000 genomes]
rs1847216	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1980266	0.80[ASN][1000 genomes]
rs2030463	0.84[AMR][1000 genomes]
rs2102116	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes]
rs2134048	0.94[ASW][hapmap];0.80[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.85[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap]
rs2134459	0.87[ASN][1000 genomes]
rs2173869	0.90[CEU][hapmap];0.92[CHB][hapmap];0.84[AMR][1000 genomes]
rs2174078	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2174079	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2174080	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2866688	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2866689	0.92[CHB][hapmap]
rs2866690	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.84[LWK][hapmap];0.85[MKK][hapmap]
rs28796999	0.83[ASN][1000 genomes]
rs28891692	0.83[ASN][1000 genomes]
rs2903291	0.92[CHB][hapmap];0.88[CHD][hapmap]
rs3205281	0.94[ASW][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.85[LWK][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes]
rs3860617	0.89[ASN][1000 genomes]
rs4304001	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4331798	0.95[ASN][1000 genomes]
rs4365752	0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs4388114	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.80[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4410552	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4417999	1.00[ASN][1000 genomes]
rs4473672	0.95[ASN][1000 genomes]
rs4541532	0.84[AMR][1000 genomes]
rs4546268	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4561950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4607246	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4859515	0.82[AMR][1000 genomes]
rs4859872	0.84[AMR][1000 genomes]
rs4859878	0.92[CHB][hapmap];0.88[CHD][hapmap]
rs4859894	0.82[AMR][1000 genomes]
rs4859896	0.82[AMR][1000 genomes]
rs4859897	0.82[AMR][1000 genomes]
rs4859901	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs55673370	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55694923	0.80[ASN][1000 genomes]
rs55886549	0.80[ASN][1000 genomes]
rs56138517	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57221952	0.95[ASN][1000 genomes]
rs57246363	0.80[ASN][1000 genomes]
rs57501818	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57868780	0.81[ASN][1000 genomes]
rs57896992	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58054752	0.95[ASN][1000 genomes]
rs58218398	0.84[ASN][1000 genomes]
rs58358199	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60135456	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6533217	0.82[AMR][1000 genomes]
rs6533239	0.92[CHB][hapmap];0.88[CHD][hapmap]
rs6533269	0.84[AMR][1000 genomes]
rs6533271	0.84[AMR][1000 genomes]
rs6533274	0.82[AMR][1000 genomes]
rs6533290	0.80[ASN][1000 genomes]
rs6533358	0.89[ASN][1000 genomes]
rs6533359	0.89[ASN][1000 genomes]
rs6533374	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6533376	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6533382	0.90[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes]
rs6817305	0.88[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6817823	0.84[AMR][1000 genomes]
rs6821826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822317	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs6823465	0.82[AMR][1000 genomes]
rs6827822	0.83[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6828302	0.84[AMR][1000 genomes]
rs6830993	0.99[ASN][1000 genomes]
rs6832015	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6833179	0.82[AMR][1000 genomes]
rs6836627	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6838630	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6839504	0.90[CEU][hapmap];0.92[CHB][hapmap];0.84[AMR][1000 genomes]
rs6849922	0.84[AMR][1000 genomes]
rs6850111	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs6850590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6851286	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6854989	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6857479	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs72868269	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72869573	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73827437	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73827443	0.80[ASN][1000 genomes]
rs73827451	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73827456	0.94[ASN][1000 genomes]
rs73827459	0.93[ASN][1000 genomes]
rs73827460	0.93[ASN][1000 genomes]
rs7439347	0.91[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.87[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7655949	0.92[CHB][hapmap];0.88[CHD][hapmap]
rs7656319	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7657658	0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs7659122	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7661064	0.88[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7663359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7671432	0.82[AMR][1000 genomes]
rs7673642	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7674744	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs7675586	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7682450	0.81[YRI][hapmap]
rs7687170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7687812	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7689226	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7692075	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7698246	0.90[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap]
rs950263	0.82[AMR][1000 genomes]
rs950264	0.90[CEU][hapmap];0.82[AMR][1000 genomes]
rs9991424	0.87[ASN][1000 genomes]
rs9993942	0.92[CHB][hapmap];0.88[CHD][hapmap]
rs9996218	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879501	chr4:78647634-78866007	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1818157	chr4:78678104-78849088	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2752050	chr4:78693311-78975321	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1010714	chr4:78742505-78991030	Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv516836	chr4:78748977-78981919	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv594704	chr4:78748977-78981919	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv461562	chr4:78757015-78981919	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv461563	chr4:78757015-78981919	Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv594705	chr4:78757015-78981919	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv1008217	chr4:78777531-78957311	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv537145	chr4:78777531-78957311	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7671941	CNOT6L	Cis_1M	lymphoblastoid	RTeQTL
rs7671941	CNOT6L	cis	Artery Tibial	GTEx

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78784800-78842200	Weak transcription	HSMMtube	muscle
2	chr4:78784800-78859800	Weak transcription	Esophagus	oesophagus
3	chr4:78785000-78841800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:78785000-78874400	Weak transcription	Right Ventricle	heart
5	chr4:78790600-78843400	Weak transcription	Small Intestine	intestine
6	chr4:78794000-78851200	Weak transcription	Spleen	Spleen
7	chr4:78794200-78851800	Weak transcription	Lung	lung
8	chr4:78802400-78858400	Weak transcription	Aorta	Aorta
9	chr4:78806000-78841400	Weak transcription	A549	lung
10	chr4:78806000-78881000	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:78806600-78875600	Weak transcription	Colonic Mucosa	Colon
12	chr4:78808800-78852400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:78809200-78836800	Weak transcription	Fetal Brain Female	brain
14	chr4:78809200-78837400	Weak transcription	Fetal Brain Male	brain
15	chr4:78809200-78847000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:78809400-78841000	Weak transcription	Hela-S3	cervix
17	chr4:78809600-78851200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:78809600-78851400	Weak transcription	Ovary	ovary
19	chr4:78809600-78865400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:78809600-78881200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:78810000-78851800	Weak transcription	Thymus	Thymus
22	chr4:78810400-78843400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr4:78814000-78841600	Weak transcription	Osteobl	bone
24	chr4:78814600-78843400	Weak transcription	Left Ventricle	heart
25	chr4:78814600-78874400	Weak transcription	Pancreas	Pancrea
26	chr4:78816400-78866400	Weak transcription	Fetal Thymus	thymus
27	chr4:78816400-78876000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:78816600-78851400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:78816600-78875800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr4:78818600-78841600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:78818800-78841600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr4:78818800-78872800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:78819200-78841600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:78819200-78842000	Weak transcription	Placenta	Placenta
35	chr4:78819200-78846200	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:78819200-78852000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr4:78819400-78843000	Weak transcription	Fetal Lung	lung
38	chr4:78819600-78841600	Weak transcription	NH-A	brain
39	chr4:78819600-78851200	Weak transcription	Adipose Nuclei	Adipose
40	chr4:78820800-78851200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr4:78821000-78849000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr4:78821000-78866000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr4:78821400-78873200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr4:78827400-78841600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr4:78827400-78843400	Weak transcription	Gastric	stomach
46	chr4:78827800-78840200	Weak transcription	Colon Smooth Muscle	Colon
47	chr4:78829600-78843400	Weak transcription	Psoas Muscle	Psoas
48	chr4:78830000-78866600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr4:78830200-78841600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:78830200-78846400	Weak transcription	Fetal Intestine Small	intestine

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