Variant report

Variant	rs6827822
Chromosome Location	chr4:78784433-78784434
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78738995..78744410-chr4:78782336..78785612,12	K562	blood:
2	chr4:78738764..78744926-chr4:78780904..78785516,9	MCF-7	breast:
3	chr4:78739289..78742998-chr4:78782109..78787360,12	MCF-7	breast:
4	chr4:78782853..78785738-chr4:78785814..78790538,6	MCF-7	breast:
5	chr4:78783315..78786116-chr4:78803157..78806156,2	MCF-7	breast:
6	chr4:78783859..78785659-chr4:78829258..78831450,2	K562	blood:
7	chr4:78734703..78743448-chr4:78779372..78785561,20	K562	blood:

Variant related genes	Relation type
ENSG00000250214	Chromatin interaction
ENSG00000169288	Chromatin interaction
ENSG00000138767	Chromatin interaction

Extended variants
information (count: 163 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10005741	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10007837	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1010728	0.91[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10222901	0.89[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1039403	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1039467	0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs10428319	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10856982	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10856991	0.81[AMR][1000 genomes]
rs11097900	0.86[AMR][1000 genomes]
rs11097935	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs11097965	0.83[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11097980	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs1156059	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11721383	0.92[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11723221	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11727993	0.84[ASN][1000 genomes]
rs11729703	0.82[ASN][1000 genomes]
rs11730329	0.98[ASN][1000 genomes]
rs11730403	0.98[ASN][1000 genomes]
rs11731374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11732039	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs11733759	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11737353	0.89[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11737861	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11931686	0.82[YRI][hapmap]
rs11939576	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12108312	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12509847	0.82[YRI][hapmap]
rs12510593	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs12643960	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13105201	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13118459	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13128914	0.88[AMR][1000 genomes]
rs13131896	0.98[ASN][1000 genomes]
rs13137909	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13144225	0.84[ASN][1000 genomes]
rs13144226	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1402626	0.98[ASN][1000 genomes]
rs1501373	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs1521419	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1553386	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs1554457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17002823	0.98[ASN][1000 genomes]
rs17002824	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17002825	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17002828	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17002829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17002831	0.98[ASN][1000 genomes]
rs1813725	0.86[ASN][1000 genomes]
rs1814033	0.85[CHB][hapmap]
rs1847216	0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap]
rs1980266	0.98[ASN][1000 genomes]
rs2030463	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2102116	0.89[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2134048	0.88[ASW][hapmap];0.81[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2173869	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2174078	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2174080	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2866688	0.89[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2866689	1.00[CHB][hapmap]
rs2866690	0.88[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes]
rs28796999	0.90[ASN][1000 genomes]
rs28891692	0.90[ASN][1000 genomes]
rs2903291	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs3205281	0.88[ASW][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3849580	0.84[ASN][1000 genomes]
rs4078523	0.96[ASN][1000 genomes]
rs4304001	0.89[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4365752	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4388114	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.80[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4410552	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4417999	0.82[ASN][1000 genomes]
rs4472161	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4541532	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4546268	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4561950	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4607246	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4859871	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs4859872	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4859878	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[ASN][1000 genomes]
rs4859901	0.82[JPT][hapmap]
rs55673370	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55694923	0.98[ASN][1000 genomes]
rs55886549	0.98[ASN][1000 genomes]
rs56138517	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57246363	0.98[ASN][1000 genomes]
rs57501818	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57868780	0.92[ASN][1000 genomes]
rs57896992	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58218398	0.98[ASN][1000 genomes]
rs58358199	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60135456	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533217	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6533226	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6533239	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6533269	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6533270	0.84[ASN][1000 genomes]
rs6533271	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6533272	0.84[ASN][1000 genomes]
rs6533274	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6533290	0.98[ASN][1000 genomes]
rs6533374	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs6533376	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs6533382	0.90[CEU][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap]
rs6817305	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6817823	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6821826	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6822317	0.91[CHB][hapmap];0.84[JPT][hapmap];0.98[ASN][1000 genomes]
rs6823465	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6828302	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6829203	0.84[EUR][1000 genomes]
rs6830993	0.81[ASN][1000 genomes]
rs6832015	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6833179	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6836627	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6838630	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6839504	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes]
rs6849922	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6850049	0.84[ASN][1000 genomes]
rs6850111	0.89[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6850590	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6851286	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs6854989	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6857067	0.84[ASN][1000 genomes]
rs6857479	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs72868269	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72869573	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73827437	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73827443	0.98[ASN][1000 genomes]
rs73827451	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7439347	0.91[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7655949	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7656319	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7657658	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7659122	0.91[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7661064	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7663359	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7671941	0.83[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7673642	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7674744	0.89[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7675586	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7682450	0.82[YRI][hapmap]
rs7687170	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7687812	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7689226	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7692075	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7698246	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs950264	0.90[CEU][hapmap]
rs9993942	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9996218	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879501	chr4:78647634-78866007	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1818157	chr4:78678104-78849088	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2752050	chr4:78693311-78975321	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1010714	chr4:78742505-78991030	Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv1824966	chr4:78747771-78823070	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv516836	chr4:78748977-78981919	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv594704	chr4:78748977-78981919	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv461562	chr4:78757015-78981919	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv461563	chr4:78757015-78981919	Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv594705	chr4:78757015-78981919	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1008217	chr4:78777531-78957311	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv537145	chr4:78777531-78957311	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6827822	CNOT6L	Cis_1M	lymphoblastoid	RTeQTL
rs6827822	G3BP2	cis	cerebellum	SCAN
rs6827822	G3BP2	cis	parietal	SCAN
rs6827822	MTHFD2L	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78782600-78784800	Active TSS	Right Atrium	heart
2	chr4:78782600-78785200	Active TSS	Stomach Smooth Muscle	stomach
3	chr4:78782600-78785400	Active TSS	Thymus	Thymus
4	chr4:78782800-78784600	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr4:78782800-78784800	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr4:78782800-78784800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:78782800-78784800	Active TSS	Colonic Mucosa	Colon
8	chr4:78782800-78785000	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr4:78782800-78785000	Active TSS	Brain Angular Gyrus	brain
10	chr4:78782800-78785000	Active TSS	Psoas Muscle	Psoas
11	chr4:78782800-78785000	Active TSS	Right Ventricle	heart
12	chr4:78782800-78785600	Active TSS	GM12878-XiMat	blood
13	chr4:78783000-78784600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:78783000-78784600	Active TSS	Aorta	Aorta
15	chr4:78783000-78784600	Active TSS	Left Ventricle	heart
16	chr4:78783000-78784800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:78783000-78784800	Active TSS	Brain Substantia Nigra	brain
18	chr4:78783000-78784800	Active TSS	Colon Smooth Muscle	Colon
19	chr4:78783000-78784800	Active TSS	Placenta	Placenta
20	chr4:78783000-78784800	Active TSS	Placenta Amnion	Placenta Amnion
21	chr4:78783000-78785000	Active TSS	H9 Cell Line	embryonic stem cell
22	chr4:78783000-78785000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:78783000-78785000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr4:78783000-78785000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:78783000-78785000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:78783000-78785000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr4:78783000-78785000	Active TSS	Brain Anterior Caudate	brain
28	chr4:78783000-78785000	Active TSS	Fetal Intestine Small	intestine
29	chr4:78783000-78785000	Active TSS	Pancreas	Pancrea
30	chr4:78783000-78785000	Active TSS	Rectal Smooth Muscle	rectum
31	chr4:78783000-78785000	Active TSS	Small Intestine	intestine
32	chr4:78783000-78785200	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr4:78783000-78785200	Active TSS	H1 Cell Line	embryonic stem cell
34	chr4:78783000-78785200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:78783000-78785200	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr4:78783000-78785400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:78783200-78784600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:78783200-78784600	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr4:78783200-78784600	Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr4:78783200-78784600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr4:78783200-78784600	Active TSS	Fetal Heart	heart
42	chr4:78783200-78784600	Active TSS	Fetal Thymus	thymus
43	chr4:78783200-78784600	Active TSS	Rectal Mucosa Donor 31	rectum
44	chr4:78783200-78784600	Active TSS	Stomach Mucosa	stomach
45	chr4:78783200-78784800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:78783200-78784800	Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr4:78783200-78784800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr4:78783200-78784800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr4:78783200-78784800	Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr4:78783200-78784800	Active TSS	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links