Variant report

Variant	rs10222901
Chromosome Location	chr4:78732149-78732150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78730446..78732718-chr4:78782584..78784100,2	K562	blood:
2	chr4:78729932..78733750-chr4:78740001..78742243,3	K562	blood:
3	chr4:78731203..78732890-chr4:78737622..78739382,2	K562	blood:
4	chr4:78727738..78737799-chr4:78737984..78742271,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169288	Chromatin interaction
ENSG00000138767	Chromatin interaction

Extended variants
information (count: 160 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:156)

rs_ID	r²[population]
rs10005741	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10005935	0.80[LWK][hapmap];0.83[YRI][hapmap]
rs10007837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1010728	0.81[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes]
rs1039403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1039467	0.92[CHB][hapmap];0.88[CHD][hapmap]
rs10428319	0.90[CEU][hapmap];0.92[CHB][hapmap];0.84[AMR][1000 genomes]
rs10856982	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10856991	0.84[AMR][1000 genomes]
rs11097900	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11097935	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11097965	0.94[ASW][hapmap];0.90[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes]
rs11097980	0.92[CHB][hapmap]
rs1156059	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11721383	0.92[CHB][hapmap]
rs11723221	1.00[CHB][hapmap]
rs11727993	1.00[ASN][1000 genomes]
rs11730329	0.86[ASN][1000 genomes]
rs11730403	0.86[ASN][1000 genomes]
rs11731374	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11732039	0.92[CHB][hapmap]
rs11733759	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs11737353	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11737861	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap]
rs11939576	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12108312	0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes]
rs12510593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12643960	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13105201	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13111592	0.95[ASN][1000 genomes]
rs13118459	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13128914	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13131896	0.86[ASN][1000 genomes]
rs13137909	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13138341	0.84[ASN][1000 genomes]
rs13144225	1.00[ASN][1000 genomes]
rs13144226	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402626	0.86[ASN][1000 genomes]
rs1501373	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1502879	0.81[AMR][1000 genomes]
rs1521419	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs1553386	0.92[CHB][hapmap]
rs1554457	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1587563	0.80[LWK][hapmap];0.83[YRI][hapmap]
rs17002823	0.86[ASN][1000 genomes]
rs17002824	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17002825	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs17002828	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17002829	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs17002831	0.86[ASN][1000 genomes]
rs1813725	0.98[ASN][1000 genomes]
rs1814033	0.85[CHB][hapmap];0.89[ASN][1000 genomes]
rs1847216	0.92[CHB][hapmap];0.88[CHD][hapmap]
rs1980266	0.86[ASN][1000 genomes]
rs2008222	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2030463	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2062637	0.92[JPT][hapmap]
rs2102116	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2134048	1.00[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2173869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174078	0.88[AMR][1000 genomes]
rs2174080	0.90[CEU][hapmap];0.92[CHB][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes]
rs2866444	0.89[ASN][1000 genomes]
rs2866688	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2866689	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs2866690	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2903291	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3205281	1.00[ASW][hapmap];0.81[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4078523	0.84[ASN][1000 genomes]
rs4304001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4365752	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs4388114	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];0.91[LWK][hapmap];0.80[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4410552	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4472161	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4541532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4546268	0.84[AMR][1000 genomes]
rs4561950	0.90[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs4607246	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4859506	0.88[ASN][1000 genomes]
rs4859871	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs4859872	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4859876	0.95[ASN][1000 genomes]
rs4859878	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55673370	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55694923	0.86[ASN][1000 genomes]
rs55886549	0.86[ASN][1000 genomes]
rs56138517	0.84[AMR][1000 genomes]
rs57246363	0.86[ASN][1000 genomes]
rs57357866	0.82[ASN][1000 genomes]
rs57501818	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57896992	0.88[AMR][1000 genomes]
rs58218398	0.81[ASN][1000 genomes]
rs58358199	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60135456	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6533217	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6533226	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6533239	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6533269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533270	1.00[ASN][1000 genomes]
rs6533271	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533272	1.00[ASN][1000 genomes]
rs6533274	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533290	0.86[ASN][1000 genomes]
rs6533374	0.92[CHB][hapmap]
rs6533376	0.92[CHB][hapmap]
rs6533382	0.91[MEX][hapmap];0.81[TSI][hapmap]
rs6814830	0.91[ASN][1000 genomes]
rs6817305	0.94[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6817823	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821826	0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[AMR][1000 genomes]
rs6822317	0.91[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs6823465	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6827822	0.89[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6828302	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6829203	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6832015	0.84[AMR][1000 genomes]
rs6833179	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6836627	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6838630	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6839504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6849922	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6850049	1.00[ASN][1000 genomes]
rs6850111	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6850590	0.92[CHB][hapmap]
rs6851286	0.92[CHB][hapmap]
rs6854989	0.84[AMR][1000 genomes]
rs6855336	0.93[ASN][1000 genomes]
rs6857067	1.00[ASN][1000 genomes]
rs6857479	0.92[CHB][hapmap]
rs72868269	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72869573	0.86[AMR][1000 genomes]
rs73827437	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73827443	0.86[ASN][1000 genomes]
rs73827451	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7439347	0.81[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs7655949	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7656319	0.88[AMR][1000 genomes]
rs7657658	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs7659122	0.81[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes]
rs7661064	0.94[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7663359	0.90[CEU][hapmap];0.92[CHB][hapmap];0.84[AMR][1000 genomes]
rs7669988	0.95[ASN][1000 genomes]
rs7671941	0.94[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs7673642	0.88[AMR][1000 genomes]
rs7674744	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7675586	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7686883	0.86[ASN][1000 genomes]
rs7687170	0.90[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs7687812	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7689226	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7692075	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7693256	0.86[ASN][1000 genomes]
rs885376	0.83[ASN][1000 genomes]
rs9654194	0.80[LWK][hapmap];0.83[YRI][hapmap]
rs9993942	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9996218	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829976	chr4:78576657-78757798	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv879501	chr4:78647634-78866007	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv1818157	chr4:78678104-78849088	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752050	chr4:78693311-78975321	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10222901	CNOT6L	cis	Artery Tibial	GTEx
rs10222901	G3BP2	cis	parietal	SCAN
rs10222901	MRPL1	cis	parietal	SCAN
rs10222901	CNOT6L	cis	Esophagus Muscularis	GTEx

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78716400-78733400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:78718800-78738600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr4:78720800-78735600	Weak transcription	HepG2	liver
4	chr4:78721000-78732400	Weak transcription	Fetal Intestine Small	intestine
5	chr4:78722200-78738600	Weak transcription	HSMM	muscle
6	chr4:78722400-78734800	Weak transcription	Fetal Intestine Large	intestine
7	chr4:78722600-78735800	Weak transcription	A549	lung
8	chr4:78722600-78737800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:78722600-78737800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:78722600-78738600	Weak transcription	NHEK	skin
11	chr4:78722600-78739000	Weak transcription	Ovary	ovary
12	chr4:78722600-78739200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:78722800-78736800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:78722800-78738600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:78723000-78732400	Weak transcription	Fetal Thymus	thymus
16	chr4:78723000-78732600	Enhancers	Primary T cells from cord blood	blood
17	chr4:78723000-78734800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:78723000-78738600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:78723200-78738600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:78724000-78735000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:78724000-78736000	Weak transcription	HUVEC	blood vessel
22	chr4:78724000-78736800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:78724200-78733600	Weak transcription	Primary B cells from cord blood	blood
24	chr4:78724400-78735600	Weak transcription	Liver	Liver
25	chr4:78724400-78738600	Weak transcription	Colonic Mucosa	Colon
26	chr4:78724800-78732800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:78724800-78738600	Weak transcription	Brain Substantia Nigra	brain
28	chr4:78725000-78732800	Weak transcription	Small Intestine	intestine
29	chr4:78725600-78734800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:78725800-78736800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr4:78725800-78738600	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr4:78727200-78737800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:78727400-78732600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr4:78727400-78733000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr4:78727400-78735600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:78727400-78735800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr4:78727400-78735800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:78727800-78732800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr4:78728600-78733800	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr4:78728600-78738600	Weak transcription	Psoas Muscle	Psoas
41	chr4:78728800-78736600	Weak transcription	Brain Hippocampus Middle	brain
42	chr4:78728800-78738600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:78729000-78736600	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:78729600-78732200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr4:78730400-78738600	Weak transcription	K562	blood
46	chr4:78731200-78733200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr4:78731400-78733200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
48	chr4:78731600-78732200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr4:78731800-78732200	Strong transcription	Primary hematopoietic stem cells	blood
50	chr4:78731800-78733000	Genic enhancers	Primary T cells fromperipheralblood	blood

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