Variant report

Variant	rs11737353
Chromosome Location	chr4:78794519-78794520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78782527..78785375-chr4:78792236..78798548,6	MCF-7	breast:
2	chr4:78791921..78794709-chr4:78802036..78804705,2	MCF-7	breast:
3	chr4:78789900..78791589-chr4:78793364..78796295,2	K562	blood:
4	chr4:78783842..78785512-chr4:78793399..78795531,2	K562	blood:

Variant related genes	Relation type
ENSG00000169288	Chromatin interaction

Extended variants
information (count: 155 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10005741	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs10007837	1.00[CHB][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1010728	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10222901	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1039403	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1039467	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs10428319	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10856982	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10856991	0.81[AMR][1000 genomes]
rs11097900	0.86[AMR][1000 genomes]
rs11097935	1.00[CHB][hapmap]
rs11097965	0.94[ASW][hapmap];0.91[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11097980	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs1156059	0.93[AMR][1000 genomes]
rs11721383	0.92[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11723221	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11729703	0.81[ASN][1000 genomes]
rs11730329	0.90[ASN][1000 genomes]
rs11730403	0.90[ASN][1000 genomes]
rs11731374	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732039	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs11733759	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11737861	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11931686	0.89[YRI][hapmap]
rs11939576	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12108312	0.83[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12509847	0.85[YRI][hapmap]
rs12510593	1.00[CHB][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes]
rs12643960	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13105201	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13118459	0.89[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13128914	0.88[AMR][1000 genomes]
rs13131896	0.90[ASN][1000 genomes]
rs13137909	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13144226	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1402626	0.90[ASN][1000 genomes]
rs1501373	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs1521419	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1553386	0.92[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap]
rs1554457	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17002823	0.90[ASN][1000 genomes]
rs17002824	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17002825	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17002828	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17002829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17002831	0.90[ASN][1000 genomes]
rs1814033	0.85[CHB][hapmap]
rs1847216	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs1980266	0.90[ASN][1000 genomes]
rs2030463	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2102116	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2134048	1.00[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.88[MKK][hapmap];0.88[TSI][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2173869	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2174078	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2174080	0.83[CEU][hapmap];0.92[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2866688	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2866689	1.00[CHB][hapmap]
rs2866690	1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes]
rs28796999	0.98[ASN][1000 genomes]
rs28891692	0.98[ASN][1000 genomes]
rs2903291	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs3205281	1.00[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4078523	0.88[ASN][1000 genomes]
rs4304001	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4365752	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4388114	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4410552	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4417999	0.81[ASN][1000 genomes]
rs4472161	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4541532	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4546268	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4561950	0.83[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4607246	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4859871	1.00[CHB][hapmap];0.92[CHD][hapmap]
rs4859872	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4859878	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs4859901	0.82[JPT][hapmap]
rs55673370	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55694923	0.90[ASN][1000 genomes]
rs55886549	0.90[ASN][1000 genomes]
rs56138517	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57246363	0.90[ASN][1000 genomes]
rs57501818	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57868780	1.00[ASN][1000 genomes]
rs57896992	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58218398	0.94[ASN][1000 genomes]
rs58358199	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60135456	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6533217	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6533226	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6533239	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs6533269	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6533271	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6533274	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6533290	0.90[ASN][1000 genomes]
rs6533374	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs6533376	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs6533382	0.82[JPT][hapmap];0.81[TSI][hapmap]
rs6817305	0.94[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6817823	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6821826	0.83[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6822317	0.91[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs6823465	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6827822	0.89[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6828302	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6829203	0.84[EUR][1000 genomes]
rs6830993	0.80[ASN][1000 genomes]
rs6832015	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6833179	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6836627	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6838630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6839504	1.00[CHB][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes]
rs6849922	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6850111	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6850590	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs6851286	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs6854989	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6857479	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs72868269	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72869573	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73827437	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73827443	0.90[ASN][1000 genomes]
rs73827451	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7439347	0.91[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7655949	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs7656319	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7657658	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7659122	0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7661064	0.94[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7663359	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7671941	0.94[ASW][hapmap];0.83[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7673642	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7674744	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[GIH][hapmap];0.81[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7675586	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7682450	0.85[YRI][hapmap]
rs7687170	0.83[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7687812	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7689226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7692075	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7698246	0.82[JPT][hapmap]
rs9993942	1.00[CHB][hapmap];0.96[CHD][hapmap]
rs9996218	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879501	chr4:78647634-78866007	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv1818157	chr4:78678104-78849088	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2752050	chr4:78693311-78975321	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1010714	chr4:78742505-78991030	Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv1824966	chr4:78747771-78823070	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv516836	chr4:78748977-78981919	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv594704	chr4:78748977-78981919	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv461562	chr4:78757015-78981919	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv461563	chr4:78757015-78981919	Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv594705	chr4:78757015-78981919	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1008217	chr4:78777531-78957311	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv537145	chr4:78777531-78957311	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11737353	G3BP2	cis	parietal	SCAN
rs11737353	CNOT6L	Cis_1M	lymphoblastoid	RTeQTL
rs11737353	G3BP2	cis	cerebellum	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78784600-78795800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:78784600-78801800	Weak transcription	Aorta	Aorta
3	chr4:78784800-78808400	Weak transcription	Brain Substantia Nigra	brain
4	chr4:78784800-78842200	Weak transcription	HSMMtube	muscle
5	chr4:78784800-78859800	Weak transcription	Esophagus	oesophagus
6	chr4:78785000-78798400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:78785000-78798800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:78785000-78798800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:78785000-78801400	Weak transcription	Pancreas	Pancrea
10	chr4:78785000-78801400	Weak transcription	Psoas Muscle	Psoas
11	chr4:78785000-78803000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr4:78785000-78805800	Weak transcription	Colonic Mucosa	Colon
13	chr4:78785000-78807000	Weak transcription	Brain Anterior Caudate	brain
14	chr4:78785000-78808400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:78785000-78808800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:78785000-78810600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:78785000-78831200	Weak transcription	Brain Angular Gyrus	brain
18	chr4:78785000-78831600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:78785000-78841800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:78785000-78874400	Weak transcription	Right Ventricle	heart
21	chr4:78785200-78794800	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:78785200-78794800	Weak transcription	Fetal Lung	lung
23	chr4:78785200-78798800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:78785200-78805000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:78785200-78806600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:78785200-78808400	Weak transcription	Fetal Brain Male	brain
27	chr4:78785200-78816200	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr4:78785200-78818800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr4:78785200-78820800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr4:78785400-78795200	Weak transcription	NHDF-Ad	bronchial
31	chr4:78785400-78797000	Weak transcription	Thymus	Thymus
32	chr4:78785400-78798800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:78785400-78808200	Weak transcription	Fetal Kidney	kidney
34	chr4:78785400-78829800	Weak transcription	Fetal Heart	heart
35	chr4:78785600-78808200	Weak transcription	Hela-S3	cervix
36	chr4:78785600-78808400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:78786000-78794800	Weak transcription	Fetal Brain Female	brain
38	chr4:78786000-78803000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr4:78786000-78804000	Weak transcription	Fetal Intestine Large	intestine
40	chr4:78786600-78799800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:78787200-78801400	Weak transcription	A549	lung
42	chr4:78787400-78794600	Weak transcription	GM12878-XiMat	blood
43	chr4:78790400-78808200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr4:78790400-78808400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr4:78790600-78796400	Weak transcription	K562	blood
46	chr4:78790600-78843400	Weak transcription	Small Intestine	intestine
47	chr4:78790800-78797200	Weak transcription	Primary B cells from cord blood	blood
48	chr4:78790800-78817400	Weak transcription	NH-A	brain
49	chr4:78791400-78808000	Weak transcription	Ovary	ovary
50	chr4:78791600-78797000	Strong transcription	Primary T helper cells PMA-I stimulated	--

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