Variant report

Variant	rs11165346
Chromosome Location	chr1:95692756-95692757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95692200..95694828-chr1:95697086..95699091,2	K562	blood:
2	chr1:95691402..95696968-chr1:95697086..95702119,8	K562	blood:
3	chr1:95674142..95676923-chr1:95691441..95693211,2	K562	blood:

Variant related genes	Relation type
ENSG00000226026	Chromatin interaction
ENSG00000122481	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10874906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10874908	0.99[ASN][1000 genomes]
rs11165314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs11165317	0.91[AMR][1000 genomes]
rs11165318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11165319	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11165333	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165343	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11165349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12021650	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12034397	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12036706	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12037572	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12048133	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12084387	0.92[CHB][hapmap]
rs12085822	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12401359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12407571	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12408858	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1927043	0.92[ASN][1000 genomes]
rs2147587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2148797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2296308	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs259340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259341	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs259344	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs259348	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259351	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs259353	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs259356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3738170	0.93[ASN][1000 genomes]
rs3738171	0.99[ASN][1000 genomes]
rs3753872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3767313	0.98[ASN][1000 genomes]
rs3767315	0.98[ASN][1000 genomes]
rs3820345	0.98[ASN][1000 genomes]
rs4950024	0.98[ASN][1000 genomes]
rs547339	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564610	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs592097	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61771764	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61771765	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61771766	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs658018	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6666528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6671408	0.99[ASN][1000 genomes]
rs6702139	1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs688633	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7528790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95670600-95698200	Weak transcription	Aorta	Aorta
2	chr1:95673400-95692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:95682400-95693800	Weak transcription	Pancreas	Pancrea
4	chr1:95682600-95698000	Weak transcription	Fetal Intestine Large	intestine
5	chr1:95684400-95694600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:95684800-95693600	Weak transcription	Left Ventricle	heart
7	chr1:95687600-95695600	Weak transcription	Liver	Liver
8	chr1:95688800-95698800	Weak transcription	Psoas Muscle	Psoas
9	chr1:95689200-95698000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:95689400-95692800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:95689400-95698200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:95691400-95692800	Enhancers	Brain Hippocampus Middle	brain
13	chr1:95692200-95693000	Enhancers	Brain Substantia Nigra	brain
14	chr1:95692200-95693200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:95692200-95693400	Enhancers	Brain Anterior Caudate	brain
16	chr1:95692200-95693400	Enhancers	HMEC	breast
17	chr1:95692200-95694000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:95692400-95693200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:95692400-95694000	Enhancers	HepG2	liver
20	chr1:95692400-95698200	Weak transcription	A549	lung
21	chr1:95692600-95692800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:95692600-95693000	Enhancers	Adipose Nuclei	Adipose
23	chr1:95692600-95693000	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr1:95692600-95693000	Enhancers	Fetal Heart	heart
25	chr1:95692600-95693200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:95692600-95693600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:95692600-95695000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr1:95692600-95696800	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links