Variant report

Variant	rs259356
Chromosome Location	chr1:95714400-95714401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95709549..95711734-chr1:95713832..95717521,4	K562	blood:
2	chr1:95704522..95709198-chr1:95712852..95716823,4	K562	blood:
3	chr1:95709549..95712529-chr1:95713832..95717521,4	K562	blood:

Variant related genes	Relation type
ENSG00000122481	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10874906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10874908	0.99[ASN][1000 genomes]
rs11165314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11165317	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11165318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165319	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165333	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11165343	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11165346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11165349	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12021650	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12034397	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12036706	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12037572	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12048133	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12084387	0.93[CHB][hapmap]
rs12085822	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12401359	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12407571	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12408858	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1927043	0.92[ASN][1000 genomes]
rs2147587	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2148797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2296308	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs259340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs259341	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs259342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs259344	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs259348	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs259351	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3738170	0.93[ASN][1000 genomes]
rs3738171	0.99[ASN][1000 genomes]
rs3753872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3767313	1.00[ASN][1000 genomes]
rs3767315	1.00[ASN][1000 genomes]
rs3820345	1.00[ASN][1000 genomes]
rs4950024	1.00[ASN][1000 genomes]
rs547339	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564610	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs592097	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61771764	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61771765	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61771766	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs658018	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6666528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6671408	0.99[ASN][1000 genomes]
rs6702139	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs688633	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7528790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95700600-95715000	Weak transcription	HUVEC	blood vessel
2	chr1:95700600-95719800	Weak transcription	NHDF-Ad	bronchial
3	chr1:95702600-95719800	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:95703400-95719000	Weak transcription	Small Intestine	intestine
5	chr1:95703600-95716200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:95703600-95720800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:95703800-95716400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:95704200-95715400	Weak transcription	Psoas Muscle	Psoas
9	chr1:95705200-95715200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:95705600-95720800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr1:95707000-95719000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr1:95707200-95715200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:95707200-95717800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:95707400-95714400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:95707400-95714800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:95707400-95717800	Weak transcription	Esophagus	oesophagus
17	chr1:95707400-95719200	Weak transcription	Spleen	Spleen
18	chr1:95707400-95719600	Weak transcription	Lung	lung
19	chr1:95707400-95719800	Weak transcription	Gastric	stomach
20	chr1:95707400-95720200	Weak transcription	HSMMtube	muscle
21	chr1:95707400-95722600	Weak transcription	Aorta	Aorta
22	chr1:95707400-95722800	Weak transcription	Pancreas	Pancrea
23	chr1:95707400-95727600	Weak transcription	Brain Angular Gyrus	brain
24	chr1:95707600-95714400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:95707600-95716000	Weak transcription	Colonic Mucosa	Colon
26	chr1:95707600-95717600	Weak transcription	GM12878-XiMat	blood
27	chr1:95707600-95720000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr1:95707800-95714400	Weak transcription	Fetal Stomach	stomach
29	chr1:95707800-95714800	Weak transcription	Thymus	Thymus
30	chr1:95707800-95715200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:95707800-95717400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr1:95707800-95719800	Weak transcription	Brain Hippocampus Middle	brain
33	chr1:95708000-95715000	Weak transcription	Right Ventricle	heart
34	chr1:95708000-95718400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr1:95708000-95718400	Weak transcription	Fetal Brain Male	brain
36	chr1:95708000-95719600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr1:95708000-95720000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:95708200-95714600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr1:95708200-95717400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:95708200-95717600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:95708200-95718800	Weak transcription	Fetal Brain Female	brain
42	chr1:95708200-95719600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr1:95708400-95723400	Weak transcription	Fetal Intestine Small	intestine
44	chr1:95709000-95715000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:95709000-95719600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr1:95709200-95715400	Weak transcription	NHLF	lung
47	chr1:95709400-95719600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr1:95709800-95715000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr1:95710000-95716200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr1:95710000-95722800	Weak transcription	K562	blood

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