Variant report

Variant	rs61771765
Chromosome Location	chr1:95682121-95682122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10874906	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10874908	0.94[ASN][1000 genomes]
rs11165314	0.88[AMR][1000 genomes]
rs11165317	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11165318	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11165319	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11165333	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11165343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165346	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11165349	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12021650	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12034397	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12036706	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12037572	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12048133	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12067935	0.85[AMR][1000 genomes]
rs12084387	0.85[AMR][1000 genomes]
rs12085822	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12401359	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12407571	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12408858	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1927043	0.97[ASN][1000 genomes]
rs2147587	0.93[ASN][1000 genomes]
rs2148797	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2296308	0.93[ASN][1000 genomes]
rs259340	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs259341	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs259348	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs259351	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs259353	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs259356	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3738170	0.88[ASN][1000 genomes]
rs3738171	0.94[ASN][1000 genomes]
rs3753872	0.94[ASN][1000 genomes]
rs3767313	0.93[ASN][1000 genomes]
rs3767315	0.93[ASN][1000 genomes]
rs3820345	0.93[ASN][1000 genomes]
rs4950024	0.93[ASN][1000 genomes]
rs547339	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs564610	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs592097	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61771764	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61771766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs658018	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6666528	0.93[ASN][1000 genomes]
rs6671408	0.94[ASN][1000 genomes]
rs6702139	0.88[AMR][1000 genomes]
rs688633	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7528790	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv870669	chr1:95586773-95690269	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95670600-95698200	Weak transcription	Aorta	Aorta
2	chr1:95673400-95683800	Weak transcription	Right Ventricle	heart
3	chr1:95673400-95692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:95675200-95686600	Weak transcription	Liver	Liver
5	chr1:95681000-95692200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:95681600-95683200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr1:95681800-95682400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr1:95681800-95682400	Strong transcription	Pancreas	Pancrea
9	chr1:95682000-95682200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:95682000-95682200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:95682000-95682400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:95682000-95682400	ZNF genes & repeats	Fetal Stomach	stomach
13	chr1:95682000-95682400	Enhancers	Gastric	stomach
14	chr1:95682000-95683000	Enhancers	Primary B cells from peripheral blood	blood

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