Variant report

Variant	rs259348
Chromosome Location	chr1:95726986-95726987
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95710160..95713037-chr1:95725437..95727549,2	K562	blood:
2	chr1:95698283..95700996-chr1:95726035..95728268,2	K562	blood:
3	chr1:95709361..95711660-chr1:95726049..95727783,2	K562	blood:

Variant related genes	Relation type
ENSG00000122481	Chromatin interaction
ENSG00000226026	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10874906	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10874908	0.98[ASN][1000 genomes]
rs11165317	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11165318	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11165319	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11165333	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165343	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11165346	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165349	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12021650	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12034397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12036706	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12037572	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12048133	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12085822	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12401359	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12407571	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12408858	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1927043	0.91[ASN][1000 genomes]
rs2147587	0.99[ASN][1000 genomes]
rs2148797	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2296308	0.99[ASN][1000 genomes]
rs259340	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259341	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs259353	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs259356	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3738170	0.92[ASN][1000 genomes]
rs3738171	0.98[ASN][1000 genomes]
rs3753872	0.98[ASN][1000 genomes]
rs3767313	0.99[ASN][1000 genomes]
rs3767315	0.99[ASN][1000 genomes]
rs3820345	0.99[ASN][1000 genomes]
rs4950024	0.99[ASN][1000 genomes]
rs547339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs564610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592097	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61771764	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61771765	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61771766	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs658018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6666528	0.97[ASN][1000 genomes]
rs6671408	0.98[ASN][1000 genomes]
rs688633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528790	0.98[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95707400-95727600	Weak transcription	Brain Angular Gyrus	brain
2	chr1:95715200-95728600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:95715800-95730400	Weak transcription	Psoas Muscle	Psoas
4	chr1:95719400-95728000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:95724200-95728400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links