Variant report

Variant	rs658018
Chromosome Location	chr1:95707210-95707211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr1:95707153-95707635	HepG2	liver:	n/a	n/a
2	POLR2A	chr1:95706765-95707325	GM12878	blood:	n/a	n/a
3	POLR2A	chr1:95707024-95707358	HepG2	liver:	n/a	n/a
4	FOXA1	chr1:95707164-95707696	HepG2	liver:	n/a	n/a
5	FOXA2	chr1:95707205-95707659	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:95704522..95709198-chr1:95712852..95716823,4	K562	blood:
2	chr1:95707163..95709586-chr1:95717891..95719480,2	K562	blood:
3	chr1:95703389..95705810-chr1:95706530..95708917,2	K562	blood:
4	chr1:95705493..95708306-chr1:95709023..95711361,3	K562	blood:
5	chr1:95698264..95701176-chr1:95704475..95708342,4	MCF-7	breast:
6	chr1:95705668..95708467-chr1:95716077..95718058,2	MCF-7	breast:

No data

Variant related genes	Relation type
RWDD3	TF binding region
ENSG00000122481	Chromatin interaction
ENSG00000226026	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10874906	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10874908	0.99[ASN][1000 genomes]
rs11165317	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11165318	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165319	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165333	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11165343	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11165346	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11165349	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12021650	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12034397	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12036706	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12037572	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12048133	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12085822	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12401359	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12407571	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12408858	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1927043	0.92[ASN][1000 genomes]
rs2147587	1.00[ASN][1000 genomes]
rs2148797	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2296308	1.00[ASN][1000 genomes]
rs259340	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs259341	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs259348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs259351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259353	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259356	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3738170	0.93[ASN][1000 genomes]
rs3738171	0.99[ASN][1000 genomes]
rs3753872	0.99[ASN][1000 genomes]
rs3767313	1.00[ASN][1000 genomes]
rs3767315	1.00[ASN][1000 genomes]
rs3820345	1.00[ASN][1000 genomes]
rs4950024	1.00[ASN][1000 genomes]
rs547339	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs564610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs592097	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61771764	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61771765	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61771766	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6666528	0.98[ASN][1000 genomes]
rs6671408	0.99[ASN][1000 genomes]
rs688633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7528790	0.99[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95700600-95712000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr1:95700600-95713200	Weak transcription	HMEC	breast
3	chr1:95700600-95715000	Weak transcription	HUVEC	blood vessel
4	chr1:95700600-95719800	Weak transcription	NHDF-Ad	bronchial
5	chr1:95702600-95719800	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:95703400-95719000	Weak transcription	Small Intestine	intestine
7	chr1:95703600-95716200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:95703600-95720800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:95703800-95716400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:95704000-95709000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:95704200-95715400	Weak transcription	Psoas Muscle	Psoas
12	chr1:95704600-95708200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:95705000-95708000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:95705000-95708000	ZNF genes & repeats	K562	blood
15	chr1:95705000-95710200	Strong transcription	Fetal Intestine Large	intestine
16	chr1:95705000-95710800	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr1:95705200-95707600	Strong transcription	Left Ventricle	heart
18	chr1:95705200-95708000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr1:95705200-95708200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:95705200-95708200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:95705200-95709400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:95705200-95710200	Strong transcription	Stomach Smooth Muscle	stomach
23	chr1:95705200-95710400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr1:95705200-95715200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:95705400-95707600	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr1:95705400-95707600	Strong transcription	Rectal Smooth Muscle	rectum
27	chr1:95705400-95707800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:95705400-95708000	ZNF genes & repeats	Primary B cells from cord blood	blood
29	chr1:95705400-95708000	Strong transcription	Adipose Nuclei	Adipose
30	chr1:95705400-95708000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:95705400-95708000	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:95705400-95708000	ZNF genes & repeats	Dnd41	blood
33	chr1:95705400-95708200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr1:95705400-95708200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr1:95705400-95708200	Strong transcription	Fetal Thymus	thymus
36	chr1:95705400-95710000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr1:95705400-95710200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:95705400-95710200	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr1:95705400-95710400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr1:95705400-95710400	Strong transcription	Osteobl	bone
41	chr1:95705600-95707600	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr1:95705600-95707800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr1:95705600-95708000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
44	chr1:95705600-95708000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
45	chr1:95705600-95708000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr1:95705600-95708000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr1:95705600-95708000	Strong transcription	HSMM	muscle
48	chr1:95705600-95708200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr1:95705600-95708400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
50	chr1:95705600-95710600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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