Variant report

Variant	rs1120905
Chromosome Location	chr12:14004177-14004178
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10744039	0.81[CEU][hapmap]
rs10845847	0.80[ASW][hapmap];0.84[CEU][hapmap];0.85[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs10845850	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12582848	0.96[CEU][hapmap];0.87[MEX][hapmap]
rs1861786	0.91[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2193509	0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2193512	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220557	0.88[CEU][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap]
rs220559	0.88[CEU][hapmap]
rs220560	0.88[CEU][hapmap]
rs220568	0.88[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs220573	0.88[CEU][hapmap];0.80[GIH][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs220575	0.92[CEU][hapmap];0.80[GIH][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs220578	0.88[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs220582	0.88[CEU][hapmap]
rs220587	0.87[GIH][hapmap]
rs220593	0.86[JPT][hapmap]
rs220599	0.92[CEU][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs2284426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2300267	0.81[CEU][hapmap]
rs2417306	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4140765	0.84[CEU][hapmap]
rs4764036	0.95[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7311764	0.80[ASW][hapmap]
rs7959821	0.80[AMR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:14000800-14005000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:14002200-14004800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:14002400-14004600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:14002400-14005400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr12:14002400-14006400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:14002600-14004600	Weak transcription	Fetal Brain Male	brain
7	chr12:14002600-14004800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr12:14002600-14005000	Enhancers	Brain Germinal Matrix	brain
9	chr12:14002800-14006200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:14002800-14006600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:14003000-14004800	Weak transcription	Fetal Brain Female	brain
12	chr12:14003400-14005400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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