Variant report

Variant	rs220568
Chromosome Location	chr12:13954737-13954738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10744039	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs10845841	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10845847	0.88[MEX][hapmap]
rs1120905	0.88[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs12582848	0.84[CEU][hapmap]
rs1861786	0.91[MEX][hapmap]
rs2160730	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs2193512	0.84[CEU][hapmap];0.85[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs220553	0.86[YRI][hapmap]
rs220557	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220558	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220561	0.90[AFR][1000 genomes]
rs220562	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220564	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs220573	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs220575	0.94[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220578	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs220582	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs220585	0.83[ASN][1000 genomes]
rs220587	0.95[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.81[ASN][1000 genomes]
rs220593	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[ASN][1000 genomes]
rs220595	0.87[ASN][1000 genomes]
rs220599	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2268127	0.83[CHB][hapmap]
rs2284426	0.88[CEU][hapmap]
rs2300267	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs2417306	0.84[CEU][hapmap];0.84[CHD][hapmap];0.80[GIH][hapmap];0.88[MEX][hapmap]
rs4140765	0.88[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs4764036	0.80[GIH][hapmap];0.91[MEX][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:13918400-13958000	Weak transcription	A549	lung
2	chr12:13953000-13956200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:13953400-13956200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr12:13953400-13961000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:13953600-13956600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links