Variant report

Variant	rs220587
Chromosome Location	chr12:13962270-13962271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10744039	0.81[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.87[ASN][1000 genomes]
rs10845841	0.85[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10845847	0.83[GIH][hapmap];0.84[MEX][hapmap]
rs11055631	0.86[ASN][1000 genomes]
rs1120905	0.87[GIH][hapmap]
rs1861786	0.92[CEU][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2160730	0.86[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs2193509	0.92[CEU][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2193512	0.95[GIH][hapmap]
rs220557	1.00[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs220558	0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs220559	0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs220560	0.95[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs220562	0.82[ASN][1000 genomes]
rs220564	0.82[ASN][1000 genomes]
rs220568	0.95[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.81[ASN][1000 genomes]
rs220573	0.95[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.81[ASN][1000 genomes]
rs220575	0.87[CHB][hapmap];0.82[CHD][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap]
rs220578	0.87[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];0.87[MEX][hapmap]
rs220582	0.81[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs220585	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220593	0.95[CHB][hapmap];0.86[CHD][hapmap];0.84[ASN][1000 genomes]
rs220595	0.84[ASN][1000 genomes]
rs220599	0.91[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2300267	0.81[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.87[ASN][1000 genomes]
rs2300272	0.83[MEX][hapmap]
rs2417306	0.85[GIH][hapmap];0.84[MEX][hapmap]
rs4140765	0.84[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.87[ASN][1000 genomes]
rs4764036	0.92[CEU][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:13958000-13962600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr12:13958200-13969000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:13958800-13969000	Weak transcription	A549	lung
4	chr12:13961400-13967200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:13961400-13968000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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