Variant report

Variant	rs220599
Chromosome Location	chr12:13975298-13975299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10744039	0.80[CEU][hapmap];0.81[CHB][hapmap];0.80[MEX][hapmap]
rs10845841	0.83[CEU][hapmap];0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10845847	0.85[GIH][hapmap];0.92[MEX][hapmap]
rs1120905	0.92[CEU][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs12582848	0.87[CEU][hapmap];0.83[MEX][hapmap]
rs1861786	0.85[GIH][hapmap];0.96[MEX][hapmap]
rs2160730	0.87[CHB][hapmap];0.95[CHD][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs2160734	0.90[YRI][hapmap]
rs2193509	0.86[YRI][hapmap]
rs2193512	0.87[CEU][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs220557	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs220558	0.95[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs220559	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs220560	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs220562	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs220564	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs220568	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs220573	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs220575	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs220578	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs220582	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs220585	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs220587	0.91[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs220590	0.90[YRI][hapmap]
rs220593	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs220595	0.92[ASN][1000 genomes]
rs2284426	0.92[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2300267	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs2417306	0.87[CEU][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap]
rs4140765	0.84[CEU][hapmap];0.81[CHB][hapmap];0.80[MEX][hapmap]
rs4764036	0.93[GIH][hapmap];0.96[MEX][hapmap];0.85[YRI][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:13971000-13990600	Weak transcription	A549	lung
2	chr12:13974400-13988400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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