Variant report

Variant	rs2193512
Chromosome Location	chr12:14005024-14005025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10744039	0.84[CEU][hapmap]
rs10845847	0.80[CEU][hapmap];0.87[GIH][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs10845850	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1120905	0.81[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12582848	0.92[CEU][hapmap];0.84[MEX][hapmap]
rs1861786	0.82[CEU][hapmap];0.91[CHB][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.80[MEX][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2193509	0.82[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs220557	0.84[CEU][hapmap];0.85[GIH][hapmap];0.84[TSI][hapmap]
rs220559	0.84[CEU][hapmap]
rs220560	0.84[CEU][hapmap]
rs220568	0.84[CEU][hapmap];0.85[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs220573	0.84[CEU][hapmap];0.88[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs220575	0.88[CEU][hapmap];0.88[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs220578	0.84[CEU][hapmap];0.85[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs220582	0.84[CEU][hapmap]
rs220587	0.95[GIH][hapmap]
rs220593	0.86[JPT][hapmap]
rs220599	0.87[CEU][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap]
rs2284426	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2300267	0.84[CEU][hapmap]
rs2417306	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4140765	0.80[CEU][hapmap]
rs4764036	0.82[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.80[MEX][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:14002400-14005400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr12:14002400-14006400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:14002800-14006200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:14002800-14006600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:14003400-14005400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:14004600-14005200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:14004600-14005200	Enhancers	Colon Smooth Muscle	Colon
8	chr12:14004600-14005200	Enhancers	Fetal Brain Male	brain
9	chr12:14004600-14005400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr12:14004600-14005400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr12:14004600-14005400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr12:14004600-14005400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr12:14004600-14005400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:14004600-14005600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr12:14004800-14005200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:14004800-14005200	Enhancers	Brain Cingulate Gyrus	brain
17	chr12:14004800-14005200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr12:14004800-14005200	Enhancers	Fetal Brain Female	brain
19	chr12:14004800-14005200	Enhancers	Pancreas	Pancrea
20	chr12:14004800-14005200	Weak transcription	A549	lung
21	chr12:14004800-14005400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:14004800-14006000	Enhancers	Gastric	stomach
23	chr12:14005000-14005200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr12:14005000-14005200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr12:14005000-14005200	Enhancers	Brain Hippocampus Middle	brain
26	chr12:14005000-14005400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr12:14005000-14007800	Enhancers	Fetal Heart	heart

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