Variant report

Variant	rs220578
Chromosome Location	chr12:13957562-13957563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10744039	0.85[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.85[ASN][1000 genomes]
rs10845841	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10845847	0.88[MEX][hapmap]
rs1120905	0.88[CEU][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs12582848	0.84[CEU][hapmap]
rs1861786	0.91[MEX][hapmap]
rs2160730	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2193512	0.84[CEU][hapmap];0.85[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs220557	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220558	0.83[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220559	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220560	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220561	0.85[AFR][1000 genomes]
rs220562	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220564	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs220568	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs220573	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs220575	0.88[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs220582	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs220587	0.87[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];0.87[MEX][hapmap]
rs220593	0.91[CHB][hapmap];0.95[CHD][hapmap];0.84[ASN][1000 genomes]
rs220595	0.84[ASN][1000 genomes]
rs220599	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2284426	0.88[CEU][hapmap]
rs2300267	0.85[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs2417306	0.84[CEU][hapmap];0.80[GIH][hapmap];0.88[MEX][hapmap]
rs4140765	0.88[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.84[MEX][hapmap];0.85[ASN][1000 genomes]
rs4764036	0.80[GIH][hapmap];0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv973032	chr12:13957034-13960740	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:13918400-13958000	Weak transcription	A549	lung
2	chr12:13953400-13961000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:13956200-13958000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr12:13956200-13958200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr12:13957000-13960600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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