Variant report

Variant	rs11230239
Chromosome Location	chr11:60072149-60072150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1020288	0.81[AMR][1000 genomes]
rs10431136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750932	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs10750935	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs10792264	0.81[AMR][1000 genomes]
rs10792265	0.84[CEU][hapmap];0.88[JPT][hapmap]
rs10792268	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10897024	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs10897027	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10897030	0.81[AMR][1000 genomes]
rs10897031	0.81[AMR][1000 genomes]
rs10897032	0.81[AMR][1000 genomes]
rs10897033	0.80[AMR][1000 genomes]
rs10897044	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs10897045	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs10897046	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs10897047	0.84[CEU][hapmap]
rs10897048	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs10897049	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11230235	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs11230240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230248	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11230275	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs11230276	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs11230280	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11605188	0.81[AMR][1000 genomes]
rs11605235	0.80[AMR][1000 genomes]
rs12225299	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12792791	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12798157	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12802385	0.81[AMR][1000 genomes]
rs1443250	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1899571	0.81[AMR][1000 genomes]
rs1899572	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2044981	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2289614	1.00[CEU][hapmap]
rs2304933	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2304934	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2304935	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2304936	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2868121	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs35905922	0.81[AMR][1000 genomes]
rs4506675	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs61900468	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7103808	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7924433	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs7931525	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7950431	0.84[CEU][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60058000-60074800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:60059200-60078400	Weak transcription	Primary B cells from cord blood	blood
3	chr11:60068200-60076600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:60068600-60076200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr11:60070000-60074200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:60070800-60073000	Enhancers	Placenta	Placenta

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