Variant report

Variant	rs10897049
Chromosome Location	chr11:60100581-60100582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:60100193-60100748	T-47D	breast:	n/a	chr11:60100673-60100686 chr11:60100494-60100504
2	GATA3	chr11:60099907-60100643	MCF-7	breast:	n/a	chr11:60100494-60100504
3	CEBPB	chr11:60100508-60100827	K562	blood:	n/a	n/a

Variant related genes	Relation type
MS4A6E	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1020288	0.86[EUR][1000 genomes]
rs10431136	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10750932	0.86[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10750933	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10750934	0.85[EUR][1000 genomes]
rs10750935	0.80[ASW][hapmap];0.83[CEU][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.86[EUR][1000 genomes]
rs10792264	0.86[EUR][1000 genomes]
rs10792265	0.82[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10792267	0.86[EUR][1000 genomes]
rs10792268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897027	0.84[EUR][1000 genomes]
rs10897028	0.85[EUR][1000 genomes]
rs10897030	0.85[EUR][1000 genomes]
rs10897031	0.86[EUR][1000 genomes]
rs10897032	0.86[EUR][1000 genomes]
rs10897033	0.85[EUR][1000 genomes]
rs10897044	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs10897045	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs10897046	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs10897047	0.86[ASW][hapmap];0.83[CEU][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10897048	0.86[ASW][hapmap];0.83[CEU][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11230239	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11230240	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11230243	0.84[EUR][1000 genomes]
rs11230248	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11230275	0.90[JPT][hapmap]
rs11230276	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs11230280	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11605188	0.86[EUR][1000 genomes]
rs11605235	0.86[EUR][1000 genomes]
rs12225299	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12792791	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12798157	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12802385	0.85[EUR][1000 genomes]
rs1443250	0.95[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1899571	0.86[EUR][1000 genomes]
rs1899572	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289614	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2304933	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2304934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2304935	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2304936	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2868118	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2868119	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2868120	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2868121	0.83[CEU][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35905922	0.85[EUR][1000 genomes]
rs4477457	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4506675	0.80[ASW][hapmap];0.83[CEU][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.86[EUR][1000 genomes]
rs61900468	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7103808	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7108879	0.85[EUR][1000 genomes]
rs7116069	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7924433	0.83[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7931525	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7950431	0.83[CEU][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10897049	OR8J1	cis	cerebellum	SCAN
rs10897049	MS4A4A	cis	cerebellum	SCAN
rs10897049	ZP1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60099800-60101800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:60100200-60101200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:60100400-60100800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:60100400-60100800	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:60100400-60101000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:60100400-60101200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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