Variant report

Variant	rs2868118
Chromosome Location	chr11:60100351-60100352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr11:60099820-60100524	T-47D	breast:	n/a	chr11:60100063-60100080
2	GATA3	chr11:60100193-60100748	T-47D	breast:	n/a	chr11:60100673-60100686 chr11:60100494-60100504
3	GATA3	chr11:60099907-60100643	MCF-7	breast:	n/a	chr11:60100494-60100504
4	ESR1	chr11:60099905-60100480	T-47D	breast:	n/a	chr11:60100063-60100080
5	ESR1	chr11:60099868-60100452	T-47D	breast:	n/a	chr11:60100063-60100080
6	NR2F2	chr11:60099975-60100471	MCF-7	breast:	n/a	n/a
7	GATA3	chr11:60099933-60100428	MCF-7	breast:	n/a	n/a
8	TAL1	chr11:60100287-60100473	K562	blood:	n/a	n/a

Variant related genes	Relation type
MS4A6E	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1020288	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10750932	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10750933	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10750934	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10750935	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792264	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10792265	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792267	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792268	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10897027	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10897028	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10897030	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10897031	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10897032	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10897033	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897047	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10897048	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10897049	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11230243	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11230248	0.84[EUR][1000 genomes]
rs11230280	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11605188	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11605235	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12225299	0.84[EUR][1000 genomes]
rs12792791	0.82[EUR][1000 genomes]
rs12798157	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12802385	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1443250	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1899571	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1899572	0.82[EUR][1000 genomes]
rs2304933	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2304934	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2304935	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2304936	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2868119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2868120	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2868121	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35905922	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4477457	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4506675	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61900468	0.83[EUR][1000 genomes]
rs7103808	0.82[EUR][1000 genomes]
rs7108879	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7116069	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924433	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7931525	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60099800-60101800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:60100000-60100400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:60100200-60101200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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