Variant report

Variant	rs2868121
Chromosome Location	chr11:60100429-60100430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr11:60099820-60100524	T-47D	breast:	n/a	chr11:60100063-60100080
2	GATA3	chr11:60100193-60100748	T-47D	breast:	n/a	chr11:60100673-60100686 chr11:60100494-60100504
3	GATA3	chr11:60099907-60100643	MCF-7	breast:	n/a	chr11:60100494-60100504
4	ESR1	chr11:60099905-60100480	T-47D	breast:	n/a	chr11:60100063-60100080
5	ESR1	chr11:60099868-60100452	T-47D	breast:	n/a	chr11:60100063-60100080
6	NR2F2	chr11:60099975-60100471	MCF-7	breast:	n/a	n/a
7	TAL1	chr11:60100287-60100473	K562	blood:	n/a	n/a

Variant related genes	Relation type
MS4A6E	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1020288	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10431136	0.81[CEU][hapmap]
rs10750932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750933	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10750934	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10750935	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792264	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792267	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792268	0.83[CEU][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10897027	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10897028	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10897030	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897031	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10897032	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897033	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10897044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs10897045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10897046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10897047	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10897048	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10897049	0.83[CEU][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11230239	0.84[CEU][hapmap];0.82[JPT][hapmap]
rs11230240	0.83[CEU][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap]
rs11230243	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11230248	0.85[EUR][1000 genomes]
rs11230275	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11230276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11230280	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11605188	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11605235	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12225299	0.85[EUR][1000 genomes]
rs12792791	0.84[EUR][1000 genomes]
rs12798157	0.85[EUR][1000 genomes]
rs12802385	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1443250	0.85[EUR][1000 genomes]
rs1899571	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1899572	0.83[EUR][1000 genomes]
rs2289614	0.83[CEU][hapmap]
rs2304933	0.83[CEU][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2304934	0.83[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs2304935	0.83[CEU][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.85[EUR][1000 genomes]
rs2304936	0.85[EUR][1000 genomes]
rs2868118	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868119	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868120	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35905922	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4477457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4506675	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900468	0.84[EUR][1000 genomes]
rs7103808	0.84[EUR][1000 genomes]
rs7108879	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7116069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7931525	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs7950431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2868121	HNRNPUL2	cis	parietal	SCAN
rs2868121	ZP1	cis	parietal	SCAN
rs2868121	MS4A4A	cis	cerebellum	SCAN
rs2868121	HRASLS2	cis	parietal	SCAN
rs2868121	OR8J1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60099800-60101800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:60100200-60101200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:60100400-60100800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:60100400-60100800	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:60100400-60101000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:60100400-60101200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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