Variant report

Variant	rs7924433
Chromosome Location	chr11:60101848-60101849
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr11:60101515-60101875	H1-hESC	embryonic stem cell:	n/a	chr11:60101692-60101711
2	CTCF	chr11:60101426-60101892	K562	blood:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
3	RAD21	chr11:60101519-60101883	GM12878	blood:	n/a	chr11:60101692-60101711
4	ZNF143	chr11:60101520-60101869	GM12878	blood:	n/a	n/a
5	CTCF	chr11:60101381-60101999	HCT-116	colon:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
6	RAD21	chr11:60101477-60102001	HCT-116	colon:	n/a	chr11:60101692-60101711
7	SMC3	chr11:60101376-60101937	SK-N-SH	brain:	n/a	chr11:60101693-60101707
8	CTCF	chr11:60101536-60102005	HCT-116	colon:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
9	CTCF	chr11:60101500-60101885	K562	blood:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
10	CTCF	chr11:60101431-60101851	MCF-7	breast:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
11	RAD21	chr11:60101522-60101871	H1-hESC	embryonic stem cell:	n/a	chr11:60101692-60101711
12	RAD21	chr11:60101399-60102013	SK-N-SH	brain:	n/a	chr11:60101692-60101711
13	CTCF	chr11:60101430-60101898	T-47D	breast:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
14	SMC3	chr11:60101537-60101854	K562	blood:	n/a	chr11:60101693-60101707
15	YY1	chr11:60101508-60101856	K562	blood:	n/a	chr11:60101615-60101627 chr11:60101619-60101627
16	CTCF	chr11:60101462-60101945	MCF-7	breast:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
17	CTCF	chr11:60101331-60101991	A549	lung:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
18	SMC3	chr11:60101507-60101887	GM12878	blood:	n/a	chr11:60101693-60101707
19	RAD21	chr11:60101528-60101865	Hela-S3	cervix:	n/a	chr11:60101692-60101711
20	RAD21	chr11:60101535-60101881	GM12878	blood:	n/a	chr11:60101692-60101711
21	CTCF	chr11:60101483-60101906	GM12878	blood:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
22	CTCF	chr11:60101522-60101872	A549	lung:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
23	RAD21	chr11:60101457-60101962	HCT-116	colon:	n/a	chr11:60101692-60101711
24	CTCF	chr11:60101545-60101857	K562	blood:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
25	SMC3	chr11:60101510-60101883	Hela-S3	cervix:	n/a	chr11:60101693-60101707
26	CTCF	chr11:60101499-60101881	IMR90	lung:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
27	RAD21	chr11:60101569-60101861	SK-N-SH_RA	brain:	n/a	chr11:60101692-60101711
28	CTCF	chr11:60101326-60102068	SK-N-SH	brain:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
29	RAD21	chr11:60101476-60101910	HepG2	liver:	n/a	chr11:60101692-60101711
30	CTCF	chr11:60101476-60101893	H1-hESC	embryonic stem cell:	n/a	chr11:60101696-60101706 chr11:60101691-60101709
31	RAD21	chr11:60101471-60101930	MCF-7	breast:	n/a	chr11:60101692-60101711
32	RAD21	chr11:60101394-60101913	H1-hESC	embryonic stem cell:	n/a	chr11:60101692-60101711
33	YY1	chr11:60101420-60101865	H1-hESC	embryonic stem cell:	n/a	chr11:60101615-60101627 chr11:60101619-60101627
34	RAD21	chr11:60101531-60101897	ECC-1	luminal epithelium:	n/a	chr11:60101692-60101711
35	CTCF	chr11:60101427-60101854	H1-hESC	embryonic stem cell:	n/a	chr11:60101696-60101706 chr11:60101691-60101709

No.	Distal block	Cell Line	Cell type
1	chr11:60100804..60102100-chr11:60385189..60386876,4	MCF-7	breast:
2	chr11:60101406..60101985-chr11:60253130..60254013,3	MCF-7	breast:
3	chr11:60032789..60033679-chr11:60101235..60102123,2	MCF-7	breast:

Variant related genes	Relation type
MS4A6E	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1020288	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10431136	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs10750932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10750933	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10750934	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10750935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792264	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10792265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792267	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792268	0.83[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10897027	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10897028	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10897030	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10897031	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10897032	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10897033	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10897044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs10897045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10897046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs10897047	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10897048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10897049	0.83[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11230239	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs11230240	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs11230243	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11230248	0.85[EUR][1000 genomes]
rs11230275	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11230276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11230280	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11605188	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11605235	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12225299	0.85[EUR][1000 genomes]
rs12792791	0.84[EUR][1000 genomes]
rs12798157	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12802385	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1443250	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1899571	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1899572	0.83[EUR][1000 genomes]
rs2289614	0.84[CEU][hapmap]
rs2304933	0.83[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2304934	0.84[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2304935	0.83[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2304936	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2868118	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868119	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868120	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2868121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35905922	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4477457	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4506675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61900468	0.84[EUR][1000 genomes]
rs7103808	0.84[EUR][1000 genomes]
rs7108879	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7116069	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7931525	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7950431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60100800-60104400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:60101000-60104200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:60101000-60105400	Enhancers	Placenta	Placenta
4	chr11:60101200-60104000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:60101800-60103800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:60101800-60103800	Weak transcription	Monocytes-CD14+_RO01746	blood

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