Variant report

Variant	rs1443250
Chromosome Location	chr11:60102790-60102791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1020288	0.85[EUR][1000 genomes]
rs10431136	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10750932	0.81[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10750933	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10750934	0.85[EUR][1000 genomes]
rs10750935	0.81[MEX][hapmap];0.85[EUR][1000 genomes]
rs10792264	0.85[EUR][1000 genomes]
rs10792265	0.85[EUR][1000 genomes]
rs10792267	0.85[EUR][1000 genomes]
rs10792268	0.95[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10897027	0.84[EUR][1000 genomes]
rs10897028	0.84[EUR][1000 genomes]
rs10897030	0.84[EUR][1000 genomes]
rs10897031	0.85[EUR][1000 genomes]
rs10897032	0.85[EUR][1000 genomes]
rs10897033	0.85[EUR][1000 genomes]
rs10897047	0.81[MEX][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10897048	0.81[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10897049	0.95[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11230239	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11230240	0.95[CEU][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11230243	0.83[EUR][1000 genomes]
rs11230248	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11230280	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11605188	0.85[EUR][1000 genomes]
rs11605235	0.85[EUR][1000 genomes]
rs12225299	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12792791	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12798157	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12802385	0.84[EUR][1000 genomes]
rs1899571	0.85[EUR][1000 genomes]
rs1899572	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2289614	0.95[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2304933	0.95[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2304934	0.95[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2304935	0.95[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2304936	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2868118	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2868119	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2868120	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2868121	0.85[EUR][1000 genomes]
rs35905922	0.84[EUR][1000 genomes]
rs4477457	0.85[EUR][1000 genomes]
rs4506675	0.81[MEX][hapmap];0.85[EUR][1000 genomes]
rs61900468	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7103808	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7108879	0.84[EUR][1000 genomes]
rs7116069	0.85[EUR][1000 genomes]
rs7924433	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7931525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1443250	ZP1	cis	parietal	SCAN
rs1443250	C11orf10	cis	parietal	SCAN
rs1443250	OR8J1	cis	cerebellum	SCAN
rs1443250	MS4A6A	cis	cerebellum	SCAN
rs1443250	MS4A4A	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60100800-60104400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:60101000-60104200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:60101000-60105400	Enhancers	Placenta	Placenta
4	chr11:60101200-60104000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:60101800-60103800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:60101800-60103800	Weak transcription	Monocytes-CD14+_RO01746	blood

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