Variant report

Variant	rs12792791
Chromosome Location	chr11:60082497-60082498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1020288	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10431136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10750932	0.86[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs10750933	0.84[EUR][1000 genomes]
rs10750934	0.84[EUR][1000 genomes]
rs10750935	0.82[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs10792264	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10792265	0.82[CEU][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs10792267	0.84[EUR][1000 genomes]
rs10792268	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10897027	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10897028	0.85[EUR][1000 genomes]
rs10897030	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10897031	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10897032	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10897033	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10897044	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs10897045	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs10897046	0.83[CEU][hapmap];0.86[JPT][hapmap]
rs10897047	0.82[CEU][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes]
rs10897048	0.82[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs10897049	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11230239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11230240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11230243	0.84[EUR][1000 genomes]
rs11230248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11230275	0.85[JPT][hapmap]
rs11230276	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs11230280	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11605188	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11605235	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12225299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12798157	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12802385	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1443250	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1899571	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1899572	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2289614	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2304933	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2304934	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2304935	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2304936	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2868118	0.82[EUR][1000 genomes]
rs2868119	0.82[EUR][1000 genomes]
rs2868120	0.82[EUR][1000 genomes]
rs2868121	0.82[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs35905922	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4477457	0.84[EUR][1000 genomes]
rs4506675	0.82[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs61900468	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103808	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7108879	0.85[EUR][1000 genomes]
rs7116069	0.84[EUR][1000 genomes]
rs7924433	0.83[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs7931525	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7950431	0.83[CEU][hapmap];0.85[JPT][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60078600-60083200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr11:60078800-60082800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:60081400-60083400	Weak transcription	Placenta	Placenta
4	chr11:60081800-60082800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:60082000-60083000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:60082000-60083800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:60082000-60083800	Enhancers	GM12878-XiMat	blood
8	chr11:60082200-60082600	Flanking Active TSS	HUVEC	blood vessel
9	chr11:60082200-60082800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:60082200-60083800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:60082400-60083000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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