Variant report

Variant	rs11563801
Chromosome Location	chr7:126616231-126616232
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1003036	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1010517	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10232276	0.87[LWK][hapmap]
rs10234281	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10236120	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10236204	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10236227	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs10265258	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs10275501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs10487463	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1121874	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs1154324	0.85[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs1154325	0.90[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs1155597	0.90[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1155656	0.83[ASN][1000 genomes]
rs11563513	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204563	0.85[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs1204567	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1204569	0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1204579	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1204583	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs1204588	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1204593	0.85[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs1204594	0.85[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs1211384	0.85[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs12164089	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs12667764	0.84[CHB][hapmap]
rs12669815	0.84[CHB][hapmap]
rs1361965	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs1361966	0.84[CHB][hapmap]
rs1361968	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1361975	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1419438	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MEX][hapmap];0.86[MKK][hapmap];0.86[TSI][hapmap]
rs1419449	0.84[CHB][hapmap]
rs1419450	0.84[CHB][hapmap]
rs1419451	0.84[CHB][hapmap]
rs1419465	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs1419468	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1419469	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1419470	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1419471	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.94[LWK][hapmap];0.90[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap]
rs1548766	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1582255	0.84[CEU][hapmap];0.95[CHB][hapmap];0.92[YRI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1592372	0.82[CHB][hapmap]
rs16871742	0.84[CHB][hapmap]
rs17150358	0.84[CHB][hapmap]
rs17861383	0.84[CHB][hapmap]
rs17862250	0.84[CHB][hapmap]
rs2022072	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs2067052	0.90[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2072416	0.85[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2106188	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs2106189	0.96[CEU][hapmap]
rs2188188	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2237775	0.84[CHB][hapmap]
rs2237776	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2518954	0.85[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs2518955	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs2535926	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2535932	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2535933	0.84[CHB][hapmap]
rs2535938	0.83[JPT][hapmap]
rs2535944	0.83[ASN][1000 genomes]
rs3808136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3808138	1.00[CEU][hapmap]
rs3808142	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3808143	0.84[CHB][hapmap]
rs4540333	0.88[CEU][hapmap]
rs4728057	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs6950713	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6975379	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs992169	0.85[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11563801	OPRM1	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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