The 2.0 version of rSNPBase

Variant report

Variant rs11582438
Chromosome Location chr1:62399883-62399884
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62336000-62408600 Weak transcription Pancreas Pancrea
2 chr1:62346200-62417600 Weak transcription Rectal Smooth Muscle rectum
3 chr1:62350600-62428200 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr1:62350800-62417600 Weak transcription Ovary ovary
5 chr1:62353800-62408800 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr1:62361600-62408800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:62362000-62408600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr1:62372400-62408800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr1:62372400-62417600 Weak transcription H9 Cell Line embryonic stem cell
10 chr1:62374600-62410600 Weak transcription Primary T regulatory cells fromperipheralblood blood
11 chr1:62375200-62404600 Weak transcription Stomach Smooth Muscle stomach
12 chr1:62376200-62417600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:62380600-62408600 Weak transcription Primary T cells fromperipheralblood blood
14 chr1:62380800-62410000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr1:62381000-62408200 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:62381000-62416000 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr1:62381200-62417400 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:62381200-62418400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr1:62381600-62402800 Weak transcription HepG2 liver
20 chr1:62383400-62408000 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr1:62384600-62403000 Weak transcription Fetal Stomach stomach
22 chr1:62384600-62408200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr1:62384600-62408800 Weak transcription Fetal Intestine Large intestine
24 chr1:62385000-62494200 Weak transcription Aorta Aorta
25 chr1:62385400-62408400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr1:62385400-62408600 Weak transcription H1 Cell Line embryonic stem cell
27 chr1:62386000-62408600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr1:62391800-62409000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
29 chr1:62392000-62408800 Weak transcription Gastric stomach
30 chr1:62392600-62408600 Weak transcription Stomach Mucosa stomach
31 chr1:62392600-62408800 Weak transcription Left Ventricle heart
32 chr1:62393800-62402800 Weak transcription Hela-S3 cervix
33 chr1:62393800-62422400 Weak transcription ES-WA7 Cell Line embryonic stem cell
34 chr1:62394800-62400400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr1:62395000-62408600 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr1:62395000-62410800 Weak transcription Liver Liver
37 chr1:62395800-62408200 Weak transcription Duodenum Mucosa Duodenum
38 chr1:62396200-62408600 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr1:62396200-62416000 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr1:62396200-62417200 Weak transcription HMEC breast
41 chr1:62396400-62408200 Weak transcription HUES64 Cell Line embryonic stem cell
42 chr1:62396400-62408600 Weak transcription iPS-20b Cell Line embryonic stem cell
43 chr1:62396400-62418000 Weak transcription Fetal Kidney kidney
44 chr1:62397000-62400400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
45 chr1:62397400-62408200 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr1:62397600-62408600 Weak transcription Primary T helper cells fromperipheralblood blood
47 chr1:62398000-62400000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:62398000-62408200 Weak transcription NHEK skin
49 chr1:62398200-62402400 Weak transcription Breast Myoepithelial Primary Cells Breast
50 chr1:62398200-62408400 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015