The 2.0 version of rSNPBase

Variant report

Variant rs61777687
Chromosome Location chr1:62560023-62560024
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62484400-62562200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr1:62508200-62628400 Weak transcription Colonic Mucosa Colon
3 chr1:62532600-62568200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:62532600-62569200 Weak transcription H1 Cell Line embryonic stem cell
5 chr1:62532600-62587600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:62532800-62569000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr1:62536200-62619400 Weak transcription Rectal Smooth Muscle rectum
8 chr1:62536800-62566000 Weak transcription Gastric stomach
9 chr1:62541600-62563000 Weak transcription Lung lung
10 chr1:62542400-62586800 Weak transcription NHEK skin
11 chr1:62542400-62587400 Weak transcription HMEC breast
12 chr1:62542600-62563000 Weak transcription Aorta Aorta
13 chr1:62543400-62569400 Weak transcription iPS-18 Cell Line embryonic stem cell
14 chr1:62544000-62575800 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:62545000-62574800 Weak transcription Fetal Kidney kidney
16 chr1:62545400-62606800 Weak transcription Placenta Amnion Placenta Amnion
17 chr1:62548200-62594000 Weak transcription Stomach Smooth Muscle stomach
18 chr1:62548400-62629800 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr1:62550200-62607800 Weak transcription Right Ventricle heart
20 chr1:62551400-62576000 Weak transcription H9 Cell Line embryonic stem cell
21 chr1:62551800-62594200 Weak transcription Primary T cells fromperipheralblood blood
22 chr1:62551800-62614000 Weak transcription Primary T cells from cord blood blood
23 chr1:62553000-62579000 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr1:62553000-62582800 Weak transcription Primary T helper cells PMA-I stimulated --
25 chr1:62553200-62594200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
26 chr1:62553400-62579600 Weak transcription Pancreas Pancrea
27 chr1:62553600-62563000 Weak transcription Fetal Intestine Small intestine
28 chr1:62553600-62579600 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr1:62554200-62562800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr1:62554200-62614000 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr1:62554400-62565000 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr1:62554400-62581600 Weak transcription Duodenum Mucosa Duodenum
33 chr1:62555000-62589800 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr1:62555000-62594200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr1:62555200-62563000 Weak transcription Esophagus oesophagus
36 chr1:62555600-62561000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:62555600-62563000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:62555600-62563000 Weak transcription Fetal Intestine Large intestine
39 chr1:62555600-62569400 Weak transcription Ovary ovary
40 chr1:62555800-62569600 Weak transcription iPS-15b Cell Line embryonic stem cell
41 chr1:62555800-62571000 Weak transcription HepG2 liver
42 chr1:62556000-62565400 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr1:62556000-62566600 Weak transcription Fetal Heart heart
44 chr1:62556000-62594200 Weak transcription Left Ventricle heart
45 chr1:62556600-62561000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:62556600-62569400 Weak transcription HUES48 Cell Line embryonic stem cell
47 chr1:62557000-62561600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
48 chr1:62557000-62562800 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr1:62559000-62566200 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr1:62559600-62582000 Weak transcription Liver Liver

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Last update: Aug 31, 2015