The 2.0 version of rSNPBase

Variant report

Variant rs1123777
Chromosome Location chr1:62488522-62488523
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62385000-62494200 Weak transcription Aorta Aorta
2 chr1:62409200-62518600 Weak transcription Pancreas Pancrea
3 chr1:62424200-62494200 Weak transcription Esophagus oesophagus
4 chr1:62458800-62521400 Weak transcription Primary T regulatory cells fromperipheralblood blood
5 chr1:62459000-62516000 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr1:62459000-62530600 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr1:62459200-62511200 Weak transcription Gastric stomach
8 chr1:62459200-62550000 Weak transcription Primary T cells fromperipheralblood blood
9 chr1:62459400-62493800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:62459600-62494200 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:62460000-62499600 Weak transcription Fetal Intestine Large intestine
12 chr1:62460000-62516400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr1:62460000-62544600 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr1:62460200-62516000 Weak transcription HMEC breast
15 chr1:62466400-62494200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr1:62469000-62533600 Weak transcription Rectal Smooth Muscle rectum
17 chr1:62474200-62518600 Weak transcription Primary T cells from cord blood blood
18 chr1:62479400-62490200 Weak transcription Left Ventricle heart
19 chr1:62479400-62490200 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:62479400-62493600 Weak transcription Stomach Smooth Muscle stomach
21 chr1:62479400-62496000 Weak transcription Fetal Kidney kidney
22 chr1:62480600-62513000 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr1:62484400-62492800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:62484400-62523000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:62484400-62562200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr1:62484600-62492400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:62484600-62493800 Weak transcription Duodenum Mucosa Duodenum
28 chr1:62484600-62494400 Weak transcription Liver Liver
29 chr1:62484600-62506000 Weak transcription NHEK skin
30 chr1:62484800-62511200 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr1:62485000-62494000 Weak transcription Fetal Intestine Small intestine
32 chr1:62486000-62492600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:62486200-62517600 Weak transcription Primary T helper cells fromperipheralblood blood
34 chr1:62487000-62488600 Enhancers HUES6 Cell Line embryonic stem cell
35 chr1:62487600-62488600 Enhancers HUES64 Cell Line embryonic stem cell
36 chr1:62487600-62488600 Enhancers iPS-15b Cell Line embryonic stem cell
37 chr1:62487600-62488600 Enhancers iPS-18 Cell Line embryonic stem cell
38 chr1:62487600-62488600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr1:62487800-62488600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:62487800-62488800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
41 chr1:62488000-62489000 Enhancers Skeletal Muscle Female skeletal muscle
42 chr1:62488000-62490400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr1:62488000-62498000 Weak transcription Fetal Heart heart
44 chr1:62488200-62488600 Enhancers H9 Cell Line embryonic stem cell
45 chr1:62488200-62488600 Enhancers Psoas Muscle Psoas
46 chr1:62488400-62489600 Weak transcription Fetal Brain Female brain
47 chr1:62488400-62489800 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr1:62488400-62491600 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr1:62488400-62494200 Weak transcription H1 Cell Line embryonic stem cell
50 chr1:62488400-62494600 Weak transcription iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015