Variant report

Variant	rs6587957
Chromosome Location	chr1:62636658-62636659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11207912	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1123777	1.00[ASN][1000 genomes]
rs11584978	1.00[ASN][1000 genomes]
rs12072694	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12072734	0.91[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12091611	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1537316	1.00[ASN][1000 genomes]
rs17122925	1.00[ASN][1000 genomes]
rs17122991	1.00[ASN][1000 genomes]
rs2457813	1.00[ASN][1000 genomes]
rs2457818	1.00[ASN][1000 genomes]
rs2457824	1.00[ASN][1000 genomes]
rs41313250	1.00[ASN][1000 genomes]
rs4456123	1.00[ASN][1000 genomes]
rs4915794	1.00[ASN][1000 genomes]
rs56689647	1.00[ASN][1000 genomes]
rs57178450	1.00[ASN][1000 genomes]
rs58604849	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61775625	1.00[ASN][1000 genomes]
rs61775631	1.00[ASN][1000 genomes]
rs61775681	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61775682	1.00[ASN][1000 genomes]
rs61777667	1.00[ASN][1000 genomes]
rs61777685	1.00[ASN][1000 genomes]
rs61777687	1.00[ASN][1000 genomes]
rs61777734	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61777736	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6697095	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72919758	1.00[ASN][1000 genomes]
rs72921841	1.00[ASN][1000 genomes]
rs7534748	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004446	chr1:62394631-62813533	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
2	nsv534984	chr1:62394631-62813533	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1001667	chr1:62407786-62649838	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv461650	chr1:62542717-62657530	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv546417	chr1:62542717-62657530	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1012683	chr1:62587852-62643998	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62608400-62643600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:62618600-62637800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:62622600-62638000	Weak transcription	Fetal Intestine Small	intestine
4	chr1:62627000-62642400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:62634600-62640600	Weak transcription	Fetal Lung	lung
6	chr1:62636200-62636800	Enhancers	Stomach Mucosa	stomach
7	chr1:62636200-62636800	Active TSS	HepG2	liver
8	chr1:62636200-62649000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:62636600-62637000	Enhancers	Fetal Intestine Large	intestine

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