The 2.0 version of rSNPBase

Variant report

Variant rs61777685
Chromosome Location chr1:62554734-62554735
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62484400-62562200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr1:62508200-62628400 Weak transcription Colonic Mucosa Colon
3 chr1:62532600-62557400 Weak transcription Spleen Spleen
4 chr1:62532600-62568200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:62532600-62569200 Weak transcription H1 Cell Line embryonic stem cell
6 chr1:62532600-62587600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:62532800-62569000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr1:62534400-62555000 Weak transcription Ovary ovary
9 chr1:62534400-62555400 Weak transcription Left Ventricle heart
10 chr1:62536200-62619400 Weak transcription Rectal Smooth Muscle rectum
11 chr1:62536800-62557400 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:62536800-62566000 Weak transcription Gastric stomach
13 chr1:62541600-62563000 Weak transcription Lung lung
14 chr1:62542400-62586800 Weak transcription NHEK skin
15 chr1:62542400-62587400 Weak transcription HMEC breast
16 chr1:62542600-62555400 Weak transcription Fetal Heart heart
17 chr1:62542600-62563000 Weak transcription Aorta Aorta
18 chr1:62543400-62569400 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr1:62544000-62575800 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr1:62544400-62555600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr1:62545000-62574800 Weak transcription Fetal Kidney kidney
22 chr1:62545400-62555600 Weak transcription iPS-20b Cell Line embryonic stem cell
23 chr1:62545400-62606800 Weak transcription Placenta Amnion Placenta Amnion
24 chr1:62548200-62594000 Weak transcription Stomach Smooth Muscle stomach
25 chr1:62548400-62629800 Weak transcription Primary T helper naive cells from peripheral blood blood
26 chr1:62549800-62555600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:62550000-62555600 Strong transcription Fetal Intestine Large intestine
28 chr1:62550000-62557000 Strong transcription Breast Myoepithelial Primary Cells Breast
29 chr1:62550200-62607800 Weak transcription Right Ventricle heart
30 chr1:62550400-62555000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr1:62550600-62558600 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr1:62551000-62555400 Weak transcription Right Atrium heart
33 chr1:62551400-62576000 Weak transcription H9 Cell Line embryonic stem cell
34 chr1:62551600-62554800 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr1:62551800-62594200 Weak transcription Primary T cells fromperipheralblood blood
36 chr1:62551800-62614000 Weak transcription Primary T cells from cord blood blood
37 chr1:62552000-62555000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr1:62552000-62555400 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr1:62552000-62556000 Weak transcription HUES64 Cell Line embryonic stem cell
40 chr1:62552400-62555000 Strong transcription Sigmoid Colon Sigmoid Colon
41 chr1:62552400-62555200 Strong transcription Esophagus oesophagus
42 chr1:62552400-62555400 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr1:62553000-62554800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:62553000-62579000 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr1:62553000-62582800 Weak transcription Primary T helper cells PMA-I stimulated --
46 chr1:62553200-62594200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr1:62553400-62579600 Weak transcription Pancreas Pancrea
48 chr1:62553600-62563000 Weak transcription Fetal Intestine Small intestine
49 chr1:62553600-62579600 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr1:62554000-62556600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015