The 2.0 version of rSNPBase

Variant report

Variant rs17122991
Chromosome Location chr1:62508144-62508145
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62409200-62518600 Weak transcription Pancreas Pancrea
2 chr1:62458800-62521400 Weak transcription Primary T regulatory cells fromperipheralblood blood
3 chr1:62459000-62516000 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr1:62459000-62530600 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr1:62459200-62511200 Weak transcription Gastric stomach
6 chr1:62459200-62550000 Weak transcription Primary T cells fromperipheralblood blood
7 chr1:62460000-62516400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr1:62460000-62544600 Weak transcription Primary T helper naive cells fromperipheralblood blood
9 chr1:62460200-62516000 Weak transcription HMEC breast
10 chr1:62469000-62533600 Weak transcription Rectal Smooth Muscle rectum
11 chr1:62474200-62518600 Weak transcription Primary T cells from cord blood blood
12 chr1:62480600-62513000 Weak transcription Primary T killer memory cells from peripheral blood blood
13 chr1:62484400-62523000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr1:62484400-62562200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr1:62484800-62511200 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr1:62486200-62517600 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr1:62488400-62521200 Weak transcription Ovary ovary
18 chr1:62491800-62511200 Weak transcription Psoas Muscle Psoas
19 chr1:62494600-62511200 Weak transcription Fetal Intestine Small intestine
20 chr1:62494600-62524400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:62494600-62524400 Weak transcription Esophagus oesophagus
22 chr1:62495000-62515200 Weak transcription Duodenum Mucosa Duodenum
23 chr1:62495200-62516000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:62495200-62544800 Weak transcription Liver Liver
25 chr1:62497200-62515000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr1:62500000-62515400 Weak transcription Fetal Intestine Large intestine
27 chr1:62500400-62511200 Weak transcription Right Ventricle heart
28 chr1:62500800-62511200 Weak transcription Skeletal Muscle Female skeletal muscle
29 chr1:62502200-62520600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr1:62503400-62509400 Weak transcription Left Ventricle heart
31 chr1:62503600-62520200 Weak transcription Fetal Brain Male brain
32 chr1:62504800-62531400 Weak transcription Aorta Aorta
33 chr1:62505400-62516200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:62505600-62510000 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr1:62505800-62516000 Weak transcription Sigmoid Colon Sigmoid Colon
36 chr1:62506200-62515200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:62506400-62509600 Weak transcription NHEK skin
38 chr1:62506800-62508800 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr1:62507000-62511000 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr1:62507000-62511200 Weak transcription ES-I3 Cell Line embryonic stem cell
41 chr1:62507000-62512200 Weak transcription Placenta Amnion Placenta Amnion
42 chr1:62507200-62511000 Weak transcription iPS-18 Cell Line embryonic stem cell
43 chr1:62507200-62511000 Weak transcription iPS-20b Cell Line embryonic stem cell
44 chr1:62507200-62511200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:62507200-62511200 Weak transcription H9 Cell Line embryonic stem cell
46 chr1:62507200-62511200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr1:62507200-62511400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
48 chr1:62507200-62523000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
49 chr1:62507200-62523600 Weak transcription ES-WA7 Cell Line embryonic stem cell
50 chr1:62507400-62511000 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015