The 2.0 version of rSNPBase

Variant report

Variant rs17122925
Chromosome Location chr1:62485450-62485451
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62385000-62494200 Weak transcription Aorta Aorta
2 chr1:62409200-62518600 Weak transcription Pancreas Pancrea
3 chr1:62424200-62494200 Weak transcription Esophagus oesophagus
4 chr1:62446600-62487600 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr1:62458800-62521400 Weak transcription Primary T regulatory cells fromperipheralblood blood
6 chr1:62459000-62516000 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr1:62459000-62530600 Weak transcription Primary T helper cells PMA-I stimulated --
8 chr1:62459200-62487800 Weak transcription HUES48 Cell Line embryonic stem cell
9 chr1:62459200-62511200 Weak transcription Gastric stomach
10 chr1:62459200-62550000 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:62459400-62493800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:62459600-62494200 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr1:62460000-62499600 Weak transcription Fetal Intestine Large intestine
14 chr1:62460000-62516400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr1:62460000-62544600 Weak transcription Primary T helper naive cells fromperipheralblood blood
16 chr1:62460200-62487600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr1:62460200-62516000 Weak transcription HMEC breast
18 chr1:62466400-62494200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr1:62469000-62533600 Weak transcription Rectal Smooth Muscle rectum
20 chr1:62469800-62488000 Weak transcription H1 Cell Line embryonic stem cell
21 chr1:62473000-62488200 Weak transcription H9 Cell Line embryonic stem cell
22 chr1:62473800-62487000 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:62474200-62518600 Weak transcription Primary T cells from cord blood blood
24 chr1:62479000-62487600 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr1:62479400-62485600 Weak transcription Ovary ovary
26 chr1:62479400-62488200 Weak transcription Psoas Muscle Psoas
27 chr1:62479400-62490200 Weak transcription Left Ventricle heart
28 chr1:62479400-62490200 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr1:62479400-62493600 Weak transcription Stomach Smooth Muscle stomach
30 chr1:62479400-62496000 Weak transcription Fetal Kidney kidney
31 chr1:62479600-62488000 Weak transcription Skeletal Muscle Female skeletal muscle
32 chr1:62480600-62513000 Weak transcription Primary T killer memory cells from peripheral blood blood
33 chr1:62482800-62488000 Weak transcription Pancreatic Islets Pancreatic Islet
34 chr1:62483200-62486000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:62483400-62488400 Strong transcription Breast Myoepithelial Primary Cells Breast
36 chr1:62484400-62492800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:62484400-62523000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:62484400-62562200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
39 chr1:62484600-62492400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:62484600-62493800 Weak transcription Duodenum Mucosa Duodenum
41 chr1:62484600-62494400 Weak transcription Liver Liver
42 chr1:62484600-62506000 Weak transcription NHEK skin
43 chr1:62484800-62511200 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr1:62485000-62494000 Weak transcription Fetal Intestine Small intestine
45 chr1:62485200-62486200 Strong transcription Primary T helper cells fromperipheralblood blood
46 chr1:62485200-62487600 Weak transcription ES-WA7 Cell Line embryonic stem cell

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Last update: Aug 31, 2015