Variant report

Variant	rs11596173
Chromosome Location	chr10:118578918-118578919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10787730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10886014	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11591751	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1614092	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1626678	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1637556	0.83[ASN][1000 genomes]
rs1637558	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1681721	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1681723	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1681725	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1681748	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2291316	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752013	0.86[ASN][1000 genomes]
rs726525	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs740363	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9420210	0.86[ASN][1000 genomes]
rs9421242	0.86[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118560600-118586200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:118569600-118586200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:118569600-118592600	Weak transcription	Pancreas	Pancrea
4	chr10:118575800-118590800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:118577000-118585400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:118577200-118585600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:118578200-118586800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:118578200-118598000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:118578600-118595000	Weak transcription	Ovary	ovary
10	chr10:118578800-118581200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:118578800-118593600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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