Variant report

Variant	rs1681748
Chromosome Location	chr10:118572521-118572522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10787730	0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10886014	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11197835	0.85[JPT][hapmap]
rs11591751	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11596173	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1614092	0.95[ASN][1000 genomes]
rs1626678	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1637556	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1637558	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681721	0.91[ASN][1000 genomes]
rs1681723	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681725	0.89[ASN][1000 genomes]
rs2291316	0.89[ASN][1000 genomes]
rs4752013	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs726525	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs740363	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9420210	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9421242	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1681748	FAM160B1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118560600-118586200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:118563400-118575400	Weak transcription	Brain Angular Gyrus	brain
3	chr10:118569600-118586200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:118569600-118592600	Weak transcription	Pancreas	Pancrea
5	chr10:118571200-118575200	Weak transcription	Brain Anterior Caudate	brain
6	chr10:118572200-118572600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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