Variant report

Variant	rs1681723
Chromosome Location	chr10:118591615-118591616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118591117..118593154-chr10:118596125..118597954,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10787730	1.00[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10886014	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197835	0.88[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap]
rs11591751	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596173	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1614092	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626678	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1637556	0.85[ASN][1000 genomes]
rs1637558	0.91[ASN][1000 genomes]
rs1637565	0.81[LWK][hapmap]
rs1681721	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681725	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1681748	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2291316	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4752013	0.88[ASN][1000 genomes]
rs726525	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs740363	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9420210	0.88[ASN][1000 genomes]
rs9421242	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1681723	DKFZp781N1041	cis	multi-tissue	Pritchard
rs1681723	KIAA1598	cis	multi-tissue	Pritchard

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118569600-118592600	Weak transcription	Pancreas	Pancrea
2	chr10:118578200-118598000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:118578600-118595000	Weak transcription	Ovary	ovary
4	chr10:118578800-118593600	Weak transcription	Fetal Intestine Large	intestine
5	chr10:118579600-118593800	Weak transcription	Brain Substantia Nigra	brain
6	chr10:118580400-118593600	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:118580400-118597000	Weak transcription	Gastric	stomach
8	chr10:118580800-118596600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:118581400-118595800	Weak transcription	Esophagus	oesophagus
10	chr10:118582000-118592200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:118582000-118593400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:118582000-118593600	Weak transcription	Brain Angular Gyrus	brain
13	chr10:118582600-118592000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:118582800-118594600	Weak transcription	Aorta	Aorta
15	chr10:118585400-118594800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:118585800-118592600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:118587000-118592600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:118587200-118592400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:118587200-118592600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:118587200-118593200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:118587200-118593800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:118587200-118593800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:118587200-118594400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:118587200-118595600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:118587200-118598000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:118587400-118592400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:118587400-118607800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:118587600-118593200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:118587800-118598600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:118588200-118593000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:118589000-118593600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:118590800-118593400	Strong transcription	Brain Cingulate Gyrus	brain
33	chr10:118590800-118607800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:118591000-118592000	Weak transcription	Fetal Intestine Small	intestine
35	chr10:118591000-118597600	Weak transcription	Liver	Liver
36	chr10:118591000-118597800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr10:118591200-118593000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:118591400-118592000	Enhancers	Left Ventricle	heart
39	chr10:118591600-118593600	Weak transcription	Brain Anterior Caudate	brain

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