Variant report

Variant	rs1626678
Chromosome Location	chr10:118576146-118576147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10787730	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10886014	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11197835	0.85[JPT][hapmap]
rs11591751	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11596173	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1614092	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1637556	0.85[ASN][1000 genomes]
rs1637558	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1681721	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1681723	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1681725	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1681748	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2291316	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4752013	0.88[ASN][1000 genomes]
rs726525	0.85[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs740363	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9420210	0.88[ASN][1000 genomes]
rs9421242	0.88[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1626678	MAEL	trans	cerebellum	SCAN
rs1626678	INPP5F	cis	parietal	SCAN
rs1626678	FAM160B1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118560600-118586200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:118569600-118586200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:118569600-118592600	Weak transcription	Pancreas	Pancrea
4	chr10:118575200-118576200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:118575200-118576600	Enhancers	NH-A	brain
6	chr10:118575400-118576200	Enhancers	Brain Germinal Matrix	brain
7	chr10:118575400-118576200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr10:118575400-118576400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:118575600-118576200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:118575600-118576400	Enhancers	HSMM	muscle
11	chr10:118575800-118590800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:118576000-118576200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:118576000-118576200	Bivalent Enhancer	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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