Variant report

Variant	rs1681725
Chromosome Location	chr10:118585449-118585450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10787730	0.85[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10886014	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11197835	0.81[CHD][hapmap];0.85[JPT][hapmap]
rs11591751	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11596173	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1614092	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1626678	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1637556	0.82[ASN][1000 genomes]
rs1637558	0.85[ASN][1000 genomes]
rs1681721	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1681723	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1681748	0.89[ASN][1000 genomes]
rs2291316	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2531687	0.86[CHB][hapmap]
rs4752013	0.85[ASN][1000 genomes]
rs726525	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs740363	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9420210	0.85[ASN][1000 genomes]
rs9421242	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1681725	DKFZp781N1041	cis	multi-tissue	Pritchard
rs1681725	KIAA1598	cis	multi-tissue	Pritchard

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118560600-118586200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:118569600-118586200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:118569600-118592600	Weak transcription	Pancreas	Pancrea
4	chr10:118575800-118590800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:118577200-118585600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:118578200-118586800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:118578200-118598000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:118578600-118595000	Weak transcription	Ovary	ovary
9	chr10:118578800-118593600	Weak transcription	Fetal Intestine Large	intestine
10	chr10:118579400-118591200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:118579600-118593800	Weak transcription	Brain Substantia Nigra	brain
12	chr10:118580200-118589200	Weak transcription	Brain Anterior Caudate	brain
13	chr10:118580400-118593600	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:118580400-118597000	Weak transcription	Gastric	stomach
15	chr10:118580800-118596600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:118581000-118589000	Weak transcription	Fetal Intestine Small	intestine
17	chr10:118581400-118595800	Weak transcription	Esophagus	oesophagus
18	chr10:118582000-118592200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:118582000-118593400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:118582000-118593600	Weak transcription	Brain Angular Gyrus	brain
21	chr10:118582600-118592000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:118582800-118594600	Weak transcription	Aorta	Aorta
23	chr10:118585200-118587000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:118585400-118585600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:118585400-118587200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr10:118585400-118587200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:118585400-118587200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:118585400-118587400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr10:118585400-118594800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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