Variant report

Variant	rs726525
Chromosome Location	chr10:118604186-118604187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118602374..118605219-chr10:118762440..118765195,2	MCF-7	breast:
2	chr10:118603239..118606782-chr10:118607012..118610763,4	MCF-7	breast:
3	chr10:118601498..118603204-chr10:118604053..118606242,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225302	Chromatin interaction
ENSG00000187164	Chromatin interaction
ENSG00000188316	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10787730	0.88[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10886014	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197835	0.85[JPT][hapmap]
rs11591751	0.89[ASN][1000 genomes]
rs11596173	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1614092	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1626678	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1637558	0.81[ASN][1000 genomes]
rs1681721	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1681723	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1681725	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1681748	0.85[ASN][1000 genomes]
rs2291316	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2531687	0.86[CHB][hapmap]
rs740363	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9421242	0.81[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118587400-118607800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:118590800-118607800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:118593800-118607600	Weak transcription	Pancreas	Pancrea
4	chr10:118594800-118607200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:118595000-118608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:118596000-118606600	Weak transcription	Brain Angular Gyrus	brain
7	chr10:118596200-118607600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:118596600-118604600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:118598200-118608200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:118599000-118608000	Weak transcription	A549	lung
11	chr10:118599400-118604800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:118599400-118607800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr10:118599400-118607800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:118599400-118608000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:118600600-118604800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:118600600-118607600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:118600800-118604600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:118600800-118604800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:118600800-118605000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:118601800-118604800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:118603200-118607400	Weak transcription	HMEC	breast
22	chr10:118603800-118604800	Weak transcription	GM12878-XiMat	blood
23	chr10:118603800-118605400	Enhancers	HUES48 Cell Line	embryonic stem cell

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