Variant report

Variant	rs9421242
Chromosome Location	chr10:118570103-118570104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10787730	0.86[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs10886014	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11197835	0.85[JPT][hapmap]
rs11591751	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11596173	0.86[ASN][1000 genomes]
rs1614092	0.91[ASN][1000 genomes]
rs1626678	0.88[ASN][1000 genomes]
rs1637556	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1637558	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681721	0.86[ASN][1000 genomes]
rs1681723	0.91[ASN][1000 genomes]
rs1681725	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1681748	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2291316	0.85[ASN][1000 genomes]
rs4752013	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs726525	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs740363	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9420210	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9421242	KIAA1598	cis	multi-tissue	Pritchard
rs9421242	DKFZp781N1041	cis	multi-tissue	Pritchard
rs9421242	FAM160B1	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118560600-118586200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:118563400-118575400	Weak transcription	Brain Angular Gyrus	brain
3	chr10:118568600-118570400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr10:118569200-118570800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:118569400-118570200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:118569400-118570200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:118569400-118570400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:118569600-118570200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:118569600-118586200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:118569600-118592600	Weak transcription	Pancreas	Pancrea
11	chr10:118569800-118572200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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