Variant report

Variant	rs11619375
Chromosome Location	chr13:96843553-96843554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96838474..96840209-chr13:96843029..96845173,2	K562	blood:
2	chr13:96837155..96838668-chr13:96842443..96845430,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10492589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616238	0.83[ASN][1000 genomes]
rs11616565	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11616566	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11616575	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11617040	0.91[ASN][1000 genomes]
rs11617420	0.85[ASN][1000 genomes]
rs11617487	0.85[ASN][1000 genomes]
rs11617543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11618119	0.91[ASN][1000 genomes]
rs11618312	0.91[ASN][1000 genomes]
rs11619328	0.91[ASN][1000 genomes]
rs11619872	0.85[ASN][1000 genomes]
rs11619967	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620111	0.91[ASN][1000 genomes]
rs12323049	0.85[ASN][1000 genomes]
rs13378684	1.00[TSI][hapmap]
rs1359857	0.88[YRI][hapmap]
rs1536576	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951460	0.91[ASN][1000 genomes]
rs16951586	0.84[EUR][1000 genomes]
rs16951620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951625	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951630	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951654	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951711	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951714	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952941	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953069	0.91[ASN][1000 genomes]
rs16953072	0.91[ASN][1000 genomes]
rs16953108	0.85[ASN][1000 genomes]
rs16953115	0.85[ASN][1000 genomes]
rs16953175	0.85[ASN][1000 genomes]
rs16953190	0.83[ASN][1000 genomes]
rs1925117	0.91[ASN][1000 genomes]
rs1925120	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1927784	0.91[ASN][1000 genomes]
rs2038823	0.91[ASN][1000 genomes]
rs2104657	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34013320	0.84[EUR][1000 genomes]
rs3825423	1.00[TSI][hapmap]
rs61966898	0.91[ASN][1000 genomes]
rs61966902	0.88[ASN][1000 genomes]
rs61966903	0.91[ASN][1000 genomes]
rs7318577	1.00[TSI][hapmap]
rs7319851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550653	0.83[ASN][1000 genomes]
rs73550662	0.83[ASN][1000 genomes]
rs73550664	0.83[ASN][1000 genomes]
rs73550684	0.83[ASN][1000 genomes]
rs9590356	1.00[TSI][hapmap]
rs9590367	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11619375	DDX6	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96843000-96843600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:96843400-96844200	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr13:96843400-96844400	Enhancers	Colon Smooth Muscle	Colon

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