Variant report

Variant	rs11617420
Chromosome Location	chr13:97014122-97014123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10492589	0.85[ASN][1000 genomes]
rs11616238	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11616565	0.94[ASN][1000 genomes]
rs11616566	0.83[ASN][1000 genomes]
rs11616575	0.85[ASN][1000 genomes]
rs11617040	0.94[ASN][1000 genomes]
rs11617487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11617543	0.85[ASN][1000 genomes]
rs11618119	0.94[ASN][1000 genomes]
rs11618312	0.94[ASN][1000 genomes]
rs11619328	0.94[ASN][1000 genomes]
rs11619375	0.85[ASN][1000 genomes]
rs11619872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11619967	0.85[ASN][1000 genomes]
rs11620111	0.94[ASN][1000 genomes]
rs12323049	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536576	0.85[ASN][1000 genomes]
rs16951460	0.94[ASN][1000 genomes]
rs16951620	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16951625	0.85[ASN][1000 genomes]
rs16951630	0.85[ASN][1000 genomes]
rs16951635	0.85[ASN][1000 genomes]
rs16951654	0.85[ASN][1000 genomes]
rs16951655	0.85[ASN][1000 genomes]
rs16951661	0.85[ASN][1000 genomes]
rs16951711	0.85[ASN][1000 genomes]
rs16951714	0.85[ASN][1000 genomes]
rs16951718	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16951722	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16951727	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16951729	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16952941	0.85[ASN][1000 genomes]
rs16953069	0.94[ASN][1000 genomes]
rs16953072	0.94[ASN][1000 genomes]
rs16953108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953115	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953175	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16953190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1925117	0.94[ASN][1000 genomes]
rs1925120	0.94[ASN][1000 genomes]
rs1927784	0.94[ASN][1000 genomes]
rs2038823	0.94[ASN][1000 genomes]
rs2104657	0.94[ASN][1000 genomes]
rs60967091	0.91[ASN][1000 genomes]
rs61966898	0.94[ASN][1000 genomes]
rs61966902	0.91[ASN][1000 genomes]
rs61966903	0.94[ASN][1000 genomes]
rs61966941	0.94[ASN][1000 genomes]
rs7319851	0.85[ASN][1000 genomes]
rs73550653	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73550662	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73550664	0.97[ASN][1000 genomes]
rs73550684	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
7	nsv900937	chr13:96976345-97275932	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv562792	chr13:96976345-97563413	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97013800-97014200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:97013800-97014400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:97013800-97014400	Enhancers	Pancreatic Islets	Pancreatic Islet

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