Variant report

Variant	rs60967091
Chromosome Location	chr13:97046473-97046474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97045257..97047343-chr13:97050874..97053623,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11616238	0.88[ASN][1000 genomes]
rs11616565	0.85[ASN][1000 genomes]
rs11617040	0.85[ASN][1000 genomes]
rs11617420	0.91[ASN][1000 genomes]
rs11617487	0.91[ASN][1000 genomes]
rs11618119	0.85[ASN][1000 genomes]
rs11618312	0.85[ASN][1000 genomes]
rs11619328	0.85[ASN][1000 genomes]
rs11619872	0.91[ASN][1000 genomes]
rs11620111	0.85[ASN][1000 genomes]
rs12323049	0.91[ASN][1000 genomes]
rs16951460	0.85[ASN][1000 genomes]
rs16953069	0.85[ASN][1000 genomes]
rs16953072	0.85[ASN][1000 genomes]
rs16953108	0.91[ASN][1000 genomes]
rs16953115	0.91[ASN][1000 genomes]
rs16953175	0.91[ASN][1000 genomes]
rs16953190	0.94[ASN][1000 genomes]
rs1925117	0.85[ASN][1000 genomes]
rs1925120	0.85[ASN][1000 genomes]
rs1927784	0.85[ASN][1000 genomes]
rs2038823	0.85[ASN][1000 genomes]
rs2104657	0.85[ASN][1000 genomes]
rs61966898	0.85[ASN][1000 genomes]
rs61966902	0.83[ASN][1000 genomes]
rs61966903	0.85[ASN][1000 genomes]
rs61966941	0.85[ASN][1000 genomes]
rs73550653	0.88[ASN][1000 genomes]
rs73550662	0.88[ASN][1000 genomes]
rs73550664	0.88[ASN][1000 genomes]
rs73550684	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900937	chr13:96976345-97275932	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv562792	chr13:96976345-97563413	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97046000-97046800	Enhancers	Fetal Lung	lung
2	chr13:97046200-97047800	Enhancers	Pancreatic Islets	Pancreatic Islet

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