Variant report

Variant	rs61966941
Chromosome Location	chr13:96996280-96996281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11616238	0.91[ASN][1000 genomes]
rs11616565	0.88[ASN][1000 genomes]
rs11616767	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11616787	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11617040	0.88[ASN][1000 genomes]
rs11617420	0.94[ASN][1000 genomes]
rs11617487	0.94[ASN][1000 genomes]
rs11618119	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11618312	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11618559	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11618566	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11619328	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11619600	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11619872	0.94[ASN][1000 genomes]
rs11620111	0.88[ASN][1000 genomes]
rs12323049	0.94[ASN][1000 genomes]
rs16951460	0.88[ASN][1000 genomes]
rs16953069	0.88[ASN][1000 genomes]
rs16953072	0.88[ASN][1000 genomes]
rs16953108	0.94[ASN][1000 genomes]
rs16953115	0.94[ASN][1000 genomes]
rs16953175	0.94[ASN][1000 genomes]
rs16953190	0.91[ASN][1000 genomes]
rs1925117	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1925120	0.88[ASN][1000 genomes]
rs1927784	0.88[ASN][1000 genomes]
rs2038823	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2104657	0.88[ASN][1000 genomes]
rs60967091	0.85[ASN][1000 genomes]
rs61966898	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61966902	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61966903	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61966942	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73550653	0.91[ASN][1000 genomes]
rs73550662	0.91[ASN][1000 genomes]
rs73550664	0.91[ASN][1000 genomes]
rs73550684	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
7	nsv900937	chr13:96976345-97275932	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
8	nsv562792	chr13:96976345-97563413	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96995400-96998800	Weak transcription	Fetal Brain Male	brain
2	chr13:96995400-96999400	Weak transcription	Fetal Intestine Small	intestine
3	chr13:96995600-96999200	Weak transcription	Fetal Brain Female	brain
4	chr13:96995800-96996800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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