Variant report

Variant	rs1925120
Chromosome Location	chr13:96938950-96938951
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96933248..96934803-chr13:96938522..96940997,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10492589	0.91[ASN][1000 genomes]
rs11616238	0.91[ASN][1000 genomes]
rs11616565	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616566	0.88[ASN][1000 genomes]
rs11616575	0.91[ASN][1000 genomes]
rs11617040	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11617420	0.94[ASN][1000 genomes]
rs11617487	0.94[ASN][1000 genomes]
rs11617543	0.91[ASN][1000 genomes]
rs11618119	1.00[ASN][1000 genomes]
rs11618312	1.00[ASN][1000 genomes]
rs11619328	1.00[ASN][1000 genomes]
rs11619375	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11619872	0.94[ASN][1000 genomes]
rs11619967	0.91[ASN][1000 genomes]
rs11620111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323049	0.94[ASN][1000 genomes]
rs1536576	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16951460	1.00[ASN][1000 genomes]
rs16951620	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16951625	0.91[ASN][1000 genomes]
rs16951630	0.91[ASN][1000 genomes]
rs16951635	0.91[ASN][1000 genomes]
rs16951654	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16951655	0.91[ASN][1000 genomes]
rs16951661	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16951711	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16951714	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16951718	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16951722	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16951727	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16951729	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16952941	0.91[ASN][1000 genomes]
rs16953069	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953072	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953108	0.94[ASN][1000 genomes]
rs16953115	0.94[ASN][1000 genomes]
rs16953175	0.94[ASN][1000 genomes]
rs16953190	0.91[ASN][1000 genomes]
rs1925117	1.00[ASN][1000 genomes]
rs1927784	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038823	1.00[ASN][1000 genomes]
rs2104657	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60967091	0.85[ASN][1000 genomes]
rs61966898	1.00[ASN][1000 genomes]
rs61966902	0.97[ASN][1000 genomes]
rs61966903	1.00[ASN][1000 genomes]
rs61966941	0.88[ASN][1000 genomes]
rs7319851	0.91[ASN][1000 genomes]
rs73550653	0.91[ASN][1000 genomes]
rs73550662	0.91[ASN][1000 genomes]
rs73550664	0.91[ASN][1000 genomes]
rs73550684	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96936800-96940200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr13:96938400-96946000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:96938600-96946400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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