Variant report

Variant	rs1925117
Chromosome Location	chr13:96948111-96948112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10492589	0.91[ASN][1000 genomes]
rs11616238	0.91[ASN][1000 genomes]
rs11616565	1.00[ASN][1000 genomes]
rs11616566	0.88[ASN][1000 genomes]
rs11616575	0.91[ASN][1000 genomes]
rs11617040	1.00[ASN][1000 genomes]
rs11617420	0.94[ASN][1000 genomes]
rs11617487	0.94[ASN][1000 genomes]
rs11617543	0.91[ASN][1000 genomes]
rs11618119	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11618287	0.90[EUR][1000 genomes]
rs11618312	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11618831	0.86[EUR][1000 genomes]
rs11619328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11619375	0.91[ASN][1000 genomes]
rs11619872	0.94[ASN][1000 genomes]
rs11619967	0.91[ASN][1000 genomes]
rs11620111	1.00[ASN][1000 genomes]
rs12323049	0.94[ASN][1000 genomes]
rs1536576	0.91[ASN][1000 genomes]
rs16951460	1.00[ASN][1000 genomes]
rs16951620	0.91[ASN][1000 genomes]
rs16951625	0.91[ASN][1000 genomes]
rs16951630	0.91[ASN][1000 genomes]
rs16951635	0.91[ASN][1000 genomes]
rs16951654	0.91[ASN][1000 genomes]
rs16951655	0.91[ASN][1000 genomes]
rs16951661	0.91[ASN][1000 genomes]
rs16951711	0.91[ASN][1000 genomes]
rs16951714	0.91[ASN][1000 genomes]
rs16951718	0.91[ASN][1000 genomes]
rs16951722	0.91[ASN][1000 genomes]
rs16951727	0.91[ASN][1000 genomes]
rs16951729	0.91[ASN][1000 genomes]
rs16952941	0.91[ASN][1000 genomes]
rs16953069	1.00[ASN][1000 genomes]
rs16953072	1.00[ASN][1000 genomes]
rs16953108	0.94[ASN][1000 genomes]
rs16953115	0.94[ASN][1000 genomes]
rs16953175	0.94[ASN][1000 genomes]
rs16953190	0.91[ASN][1000 genomes]
rs1925120	1.00[ASN][1000 genomes]
rs1927784	1.00[ASN][1000 genomes]
rs2038823	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104657	1.00[ASN][1000 genomes]
rs59805867	0.90[EUR][1000 genomes]
rs60769907	0.90[EUR][1000 genomes]
rs60967091	0.85[ASN][1000 genomes]
rs61966863	0.86[EUR][1000 genomes]
rs61966874	0.90[EUR][1000 genomes]
rs61966876	0.90[EUR][1000 genomes]
rs61966895	0.90[EUR][1000 genomes]
rs61966896	0.90[EUR][1000 genomes]
rs61966898	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61966902	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61966903	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61966941	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61968043	0.85[EUR][1000 genomes]
rs7319851	0.91[ASN][1000 genomes]
rs73550653	0.91[ASN][1000 genomes]
rs73550662	0.91[ASN][1000 genomes]
rs73550664	0.91[ASN][1000 genomes]
rs73550684	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96946800-96951400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:96947600-96948200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr13:96947600-96948200	Enhancers	Rectal Smooth Muscle	rectum
4	chr13:96947800-96948200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr13:96947800-96948200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr13:96947800-96948200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr13:96947800-96948200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr13:96947800-96948200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr13:96947800-96948200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr13:96947800-96948200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr13:96947800-96948200	Flanking Active TSS	Stomach Smooth Muscle	stomach
12	chr13:96947800-96948400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr13:96947800-96948600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr13:96948000-96948200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr13:96948000-96948200	Enhancers	Colon Smooth Muscle	Colon
16	chr13:96948000-96948800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links