Variant report

Variant	rs16953190
Chromosome Location	chr13:97040727-97040728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96705085..96707362-chr13:97040004..97041510,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102595	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10492589	0.83[ASN][1000 genomes]
rs11616238	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11616565	0.91[ASN][1000 genomes]
rs11616575	0.83[ASN][1000 genomes]
rs11617040	0.91[ASN][1000 genomes]
rs11617420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11617487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11617543	0.83[ASN][1000 genomes]
rs11618119	0.91[ASN][1000 genomes]
rs11618312	0.91[ASN][1000 genomes]
rs11619328	0.91[ASN][1000 genomes]
rs11619375	0.83[ASN][1000 genomes]
rs11619872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11619967	0.83[ASN][1000 genomes]
rs11620111	0.91[ASN][1000 genomes]
rs12323049	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1536576	0.83[ASN][1000 genomes]
rs16951460	0.91[ASN][1000 genomes]
rs16951620	0.83[ASN][1000 genomes]
rs16951625	0.83[ASN][1000 genomes]
rs16951630	0.83[ASN][1000 genomes]
rs16951635	0.83[ASN][1000 genomes]
rs16951654	0.83[ASN][1000 genomes]
rs16951655	0.83[ASN][1000 genomes]
rs16951661	0.83[ASN][1000 genomes]
rs16951711	0.83[ASN][1000 genomes]
rs16951714	0.83[ASN][1000 genomes]
rs16951718	0.83[ASN][1000 genomes]
rs16951722	0.83[ASN][1000 genomes]
rs16951727	0.83[ASN][1000 genomes]
rs16951729	0.83[ASN][1000 genomes]
rs16952941	0.83[ASN][1000 genomes]
rs16953069	0.91[ASN][1000 genomes]
rs16953072	0.91[ASN][1000 genomes]
rs16953108	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16953115	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16953175	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1925117	0.91[ASN][1000 genomes]
rs1925120	0.91[ASN][1000 genomes]
rs1927784	0.91[ASN][1000 genomes]
rs2038823	0.91[ASN][1000 genomes]
rs2104657	0.91[ASN][1000 genomes]
rs60967091	0.94[ASN][1000 genomes]
rs61966898	0.91[ASN][1000 genomes]
rs61966902	0.88[ASN][1000 genomes]
rs61966903	0.91[ASN][1000 genomes]
rs61966941	0.91[ASN][1000 genomes]
rs7319851	0.83[ASN][1000 genomes]
rs73550653	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73550662	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73550664	0.94[ASN][1000 genomes]
rs73550684	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900937	chr13:96976345-97275932	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv562792	chr13:96976345-97563413	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97034400-97040800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:97040400-97041000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr13:97040400-97041200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:97040400-97046200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:97040600-97041000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:97040600-97041400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:97040600-97041600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:97040600-97041600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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