Variant report

Variant	rs16952941
Chromosome Location	chr13:96898238-96898239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10492589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616238	0.83[ASN][1000 genomes]
rs11616565	0.91[ASN][1000 genomes]
rs11616566	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11616575	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11617040	0.91[ASN][1000 genomes]
rs11617420	0.85[ASN][1000 genomes]
rs11617487	0.85[ASN][1000 genomes]
rs11617543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11618119	0.91[ASN][1000 genomes]
rs11618312	0.91[ASN][1000 genomes]
rs11619328	0.91[ASN][1000 genomes]
rs11619375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11619872	0.85[ASN][1000 genomes]
rs11619967	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620111	0.91[ASN][1000 genomes]
rs12323049	0.85[ASN][1000 genomes]
rs1536576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951460	0.91[ASN][1000 genomes]
rs16951586	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16951620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951654	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951711	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951714	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953069	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16953072	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16953108	0.85[ASN][1000 genomes]
rs16953115	0.85[ASN][1000 genomes]
rs16953175	0.85[ASN][1000 genomes]
rs16953190	0.83[ASN][1000 genomes]
rs1925117	0.91[ASN][1000 genomes]
rs1925120	0.91[ASN][1000 genomes]
rs1927784	0.91[ASN][1000 genomes]
rs2038823	0.91[ASN][1000 genomes]
rs2104657	0.91[ASN][1000 genomes]
rs34013320	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61966898	0.91[ASN][1000 genomes]
rs61966902	0.88[ASN][1000 genomes]
rs61966903	0.91[ASN][1000 genomes]
rs7319851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73550653	0.83[ASN][1000 genomes]
rs73550662	0.83[ASN][1000 genomes]
rs73550664	0.83[ASN][1000 genomes]
rs73550684	0.83[ASN][1000 genomes]
rs9590367	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1136	chr13:96892691-96937795	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96895800-96899800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:96896000-96899800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:96896000-96899800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:96896800-96901000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:96897800-96902800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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