Variant report

Variant	rs11617040
Chromosome Location	chr13:96924615-96924616
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10492589	0.91[ASN][1000 genomes]
rs11616238	0.91[ASN][1000 genomes]
rs11616565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616566	0.88[ASN][1000 genomes]
rs11616575	0.91[ASN][1000 genomes]
rs11617420	0.94[ASN][1000 genomes]
rs11617487	0.94[ASN][1000 genomes]
rs11617543	0.91[ASN][1000 genomes]
rs11618119	1.00[ASN][1000 genomes]
rs11618312	1.00[ASN][1000 genomes]
rs11619328	1.00[ASN][1000 genomes]
rs11619375	0.91[ASN][1000 genomes]
rs11619872	0.94[ASN][1000 genomes]
rs11619967	0.91[ASN][1000 genomes]
rs11620111	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323049	0.94[ASN][1000 genomes]
rs1536576	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16951460	1.00[ASN][1000 genomes]
rs16951620	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16951625	0.91[ASN][1000 genomes]
rs16951630	0.91[ASN][1000 genomes]
rs16951635	0.91[ASN][1000 genomes]
rs16951654	0.91[ASN][1000 genomes]
rs16951655	0.91[ASN][1000 genomes]
rs16951661	0.91[ASN][1000 genomes]
rs16951711	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16951714	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16951718	1.00[CEU][hapmap];0.91[ASN][1000 genomes]
rs16951722	1.00[CEU][hapmap];0.91[ASN][1000 genomes]
rs16951727	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16951729	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16952941	0.91[ASN][1000 genomes]
rs16953069	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953072	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953108	0.94[ASN][1000 genomes]
rs16953115	0.94[ASN][1000 genomes]
rs16953175	0.94[ASN][1000 genomes]
rs16953190	0.91[ASN][1000 genomes]
rs1925117	1.00[ASN][1000 genomes]
rs1925120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927784	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038823	1.00[ASN][1000 genomes]
rs2104657	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60967091	0.85[ASN][1000 genomes]
rs61966898	1.00[ASN][1000 genomes]
rs61966902	0.97[ASN][1000 genomes]
rs61966903	1.00[ASN][1000 genomes]
rs61966941	0.88[ASN][1000 genomes]
rs7319851	0.91[ASN][1000 genomes]
rs73550653	0.91[ASN][1000 genomes]
rs73550662	0.91[ASN][1000 genomes]
rs73550664	0.91[ASN][1000 genomes]
rs73550684	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050430	chr13:96508530-97020734	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541883	chr13:96508530-97020734	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1041165	chr13:96522021-96966520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869471	chr13:96622327-97223956	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv530390	chr13:96681439-97193029	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
6	nsv900936	chr13:96697209-97032483	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1136	chr13:96892691-96937795	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv530742	chr13:96917313-97627023	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
9	nsv976262	chr13:96918599-96924766	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3515251	chr13:96919651-96926085	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3515240	chr13:96919697-96926062	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3515229	chr13:96919723-96926006	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3443151	chr13:96919777-96925959	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3515262	chr13:96919792-96925955	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv10256	chr13:96919835-96926010	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv2760278	chr13:96920844-96924615	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96921800-96925200	Enhancers	Fetal Intestine Large	intestine
2	chr13:96922200-96924800	Enhancers	Fetal Intestine Small	intestine
3	chr13:96922600-96926600	Weak transcription	Pancreas	Pancrea
4	chr13:96924200-96926800	Enhancers	Pancreatic Islets	Pancreatic Islet

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