Variant report

Variant	rs11635115
Chromosome Location	chr15:78385810-78385811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:78385522-78386098	SK-N-SH_RA	brain:	n/a	n/a
2	EP300	chr15:78385546-78386109	SK-N-SH_RA	brain:	n/a	n/a
3	MAX	chr15:78385524-78386090	SK-N-SH	brain:	n/a	n/a
4	RCOR1	chr15:78384936-78386396	IMR90	lung:	n/a	n/a
5	EP300	chr15:78385455-78386318	SK-N-SH	brain:	n/a	n/a
6	CTCF	chr15:78385740-78385890	NHLF	lung:	n/a	n/a
7	CTCF	chr15:78385780-78385930	AG09309	skin:	n/a	n/a
8	TCF12	chr15:78385239-78386355	SK-N-SH	brain:	n/a	n/a
9	JUND	chr15:78385464-78386227	SK-N-SH	brain:	n/a	n/a
10	JUND	chr15:78385477-78386181	SK-N-SH	brain:	n/a	n/a
11	GATA3	chr15:78385335-78386272	SK-N-SH	brain:	n/a	chr15:78385526-78385534
12	RAD21	chr15:78385622-78386070	SK-N-SH_RA	brain:	n/a	n/a
13	RXRA	chr15:78385446-78386259	SK-N-SH	brain:	n/a	chr15:78385956-78385965
14	POLR2A	chr15:78385511-78386093	SK-N-SH	brain:	n/a	n/a
15	NFIC	chr15:78385460-78386208	SK-N-SH	brain:	n/a	n/a
16	TEAD4	chr15:78385436-78386197	SK-N-SH	brain:	n/a	n/a
17	MYC	chr15:78385768-78385931	MCF10A-Er-Src	breast:	n/a	n/a
18	GATA3	chr15:78385349-78386202	SK-N-SH	brain:	n/a	chr15:78385526-78385534
19	REST	chr15:78385731-78386106	SK-N-SH	brain:	n/a	n/a
20	NFIC	chr15:78385384-78386268	SK-N-SH	brain:	n/a	n/a
21	REST	chr15:78385710-78385993	SK-N-SH	brain:	n/a	n/a
22	SIN3AK20	chr15:78385583-78386157	SK-N-SH	brain:	n/a	n/a
23	PBX3	chr15:78385460-78386227	SK-N-SH	brain:	n/a	n/a
24	RAD21	chr15:78385717-78386084	IMR90	lung:	n/a	n/a
25	EP300	chr15:78385394-78386307	SK-N-SH	brain:	n/a	n/a
26	PBX3	chr15:78385438-78386336	SK-N-SH	brain:	n/a	n/a
27	SIN3AK20	chr15:78385722-78386013	SK-N-SH	brain:	n/a	n/a
28	FOSL2	chr15:78385497-78386162	SK-N-SH	brain:	n/a	n/a
29	TAF1	chr15:78385735-78386002	SK-N-SH	brain:	n/a	n/a
30	POLR2A	chr15:78385577-78386062	SK-N-SH	brain:	n/a	n/a
31	TCF12	chr15:78385254-78386371	SK-N-SH	brain:	n/a	n/a
32	MAX	chr15:78385602-78386125	SK-N-SH	brain:	n/a	n/a
33	TEAD4	chr15:78385445-78386284	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000199633	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11630013	1.00[ASN][1000 genomes]
rs11635268	1.00[ASN][1000 genomes]
rs16969502	1.00[ASN][1000 genomes]
rs17398057	1.00[ASN][1000 genomes]
rs17399424	1.00[ASN][1000 genomes]
rs34057735	1.00[ASN][1000 genomes]
rs4438275	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4887008	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55829894	1.00[ASN][1000 genomes]
rs55914317	1.00[ASN][1000 genomes]
rs57778149	1.00[ASN][1000 genomes]
rs59075488	1.00[ASN][1000 genomes]
rs60790001	1.00[ASN][1000 genomes]
rs62008166	1.00[ASN][1000 genomes]
rs62008596	1.00[ASN][1000 genomes]
rs62009267	0.80[AFR][1000 genomes]
rs62011475	1.00[ASN][1000 genomes]
rs62011476	1.00[ASN][1000 genomes]
rs62011479	1.00[ASN][1000 genomes]
rs62011482	1.00[ASN][1000 genomes]
rs62011483	1.00[ASN][1000 genomes]
rs62011509	1.00[ASN][1000 genomes]
rs62011510	1.00[ASN][1000 genomes]
rs62011512	1.00[ASN][1000 genomes]
rs62011516	1.00[ASN][1000 genomes]
rs62011518	1.00[ASN][1000 genomes]
rs62011519	1.00[ASN][1000 genomes]
rs62011521	1.00[ASN][1000 genomes]
rs7163268	1.00[ASN][1000 genomes]
rs7163579	1.00[ASN][1000 genomes]
rs7165474	1.00[ASN][1000 genomes]
rs7182599	1.00[ASN][1000 genomes]
rs7183671	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74024166	1.00[ASN][1000 genomes]
rs74024170	1.00[ASN][1000 genomes]
rs8028842	1.00[ASN][1000 genomes]
rs8039850	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs894298	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78380200-78386400	Enhancers	Stomach Mucosa	stomach
2	chr15:78382400-78386800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:78383000-78386600	Enhancers	Fetal Lung	lung
4	chr15:78383200-78387200	Enhancers	Fetal Intestine Small	intestine
5	chr15:78383400-78386800	Enhancers	Fetal Muscle Leg	muscle
6	chr15:78383800-78386600	Enhancers	Right Ventricle	heart
7	chr15:78383800-78386600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr15:78384000-78386600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr15:78384000-78387000	Enhancers	Fetal Stomach	stomach
10	chr15:78384200-78386400	Enhancers	Left Ventricle	heart
11	chr15:78384200-78387000	Enhancers	HSMM	muscle
12	chr15:78384400-78386200	Enhancers	Adipose Nuclei	Adipose
13	chr15:78384600-78386200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:78384600-78386200	Enhancers	Dnd41	blood
15	chr15:78384600-78386400	Enhancers	Colonic Mucosa	Colon
16	chr15:78384600-78386400	Enhancers	Fetal Thymus	thymus
17	chr15:78384600-78386600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:78384600-78386600	Enhancers	Placenta	Placenta
19	chr15:78384600-78386600	Enhancers	Ovary	ovary
20	chr15:78384600-78387200	Enhancers	Fetal Intestine Large	intestine
21	chr15:78384600-78387200	Enhancers	Stomach Smooth Muscle	stomach
22	chr15:78384600-78387200	Enhancers	HSMMtube	muscle
23	chr15:78384800-78386600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr15:78385000-78386400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr15:78385000-78386600	Enhancers	NHLF	lung
26	chr15:78385000-78386800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:78385000-78386800	Enhancers	Fetal Muscle Trunk	muscle
28	chr15:78385000-78386800	Enhancers	Placenta Amnion	Placenta Amnion
29	chr15:78385200-78386000	Weak transcription	Gastric	stomach
30	chr15:78385200-78386400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:78385200-78386400	Weak transcription	Lung	lung
32	chr15:78385200-78386400	Enhancers	Rectal Smooth Muscle	rectum
33	chr15:78385200-78386400	Enhancers	NH-A	brain
34	chr15:78385200-78386600	Enhancers	NHDF-Ad	bronchial
35	chr15:78385200-78387200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:78385200-78400600	Weak transcription	Pancreas	Pancrea
37	chr15:78385400-78386200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:78385400-78386200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:78385400-78386200	Enhancers	Colon Smooth Muscle	Colon
40	chr15:78385400-78386200	Bivalent Enhancer	Osteobl	bone
41	chr15:78385400-78386400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:78385600-78386200	Enhancers	Fetal Kidney	kidney
43	chr15:78385600-78386200	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr15:78385600-78386400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr15:78385600-78386400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
46	chr15:78385600-78386600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr15:78385600-78386600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr15:78385600-78386600	Weak transcription	Small Intestine	intestine
49	chr15:78385600-78386800	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr15:78385600-78395400	Weak transcription	Spleen	Spleen

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